R: get mutation frequency

getFreqMutData {bioCancer}

R Documentation

get mutation frequency

Description

get mutation frequency

Usage

getFreqMutData(list, geneListLabel)

Arguments

`list`	a list of data frame with mutation data. Each data frame is for one study
`geneListLabel`	file name of geneList examples: "73"

Value

a data frame with mutation frequency. gene is in rows and study is in column

Examples

cgds <- CGDS("http://www.cbioportal.org/")
## Not run: 
geneList <- whichGeneList("73")
r_data <- new.env()
MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
 "gbm_tcga_pub_mutations", geneList )
FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73")

## End(Not run)

[Package bioCancer version 1.15.02 Index]