R: Attribute gene Methylation to Nodes

Node_obj_Met_ProfData {bioCancer}

R Documentation

Attribute gene Methylation to Nodes

Description

Attribute gene Methylation to Nodes

Usage

Node_obj_Met_ProfData(list, type, threshold)

Arguments

`list`	a list of data frame with methylation data
`type`	HM450 or HM27
`threshold`	the Rate cases (patients) that have a silencing genes by methylation

Value

a data frame with node shape attributes

Examples

cgds <- CGDS("http://www.cbioportal.org/")
## Not run: 
GeneList <- whichGeneList("DNA_damage_Response")
ProfDataMET <- cgdsr::getProfileData(cgds,GeneList, "gbm_tcga_pub_methylation","gbm_tcga_pub_all")
ListProfDataMET <- list(ls1=ProfDataMET, ls2=ProfDataMET)
nodeObj <- Node_obj_Met_ProfData(ListProfDataMET, "HM450",0.1)

## End(Not run)

[Package bioCancer version 1.15.02 Index]