| Mutation_obj {bioCancer} | R Documentation |
Atribute mutation frequency to nodes
Mutation_obj(list,FreqMutThreshold, geneListLabel)
list |
A list of data frame with mutation data. Each data frame to study |
FreqMutThreshold |
threshold Rate of cases (patients) having mutation (0-1). |
geneListLabel |
file name of geneList examples: "73" |
A dat frame with mutation frequency. Ech column corresponds to a study.
cgds <- CGDS("http://www.cbioportal.org/")
## Not run:
geneList <- whichGeneList("73")
MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
"gbm_tcga_pub_mutations", geneList )
listMutData <- list(ls1=MutData, ls2=MutData)
FreqMutThreshold <- 10
r_data <- new.env()
MutObj <- Mutation_obj(listMutData, 10, "73")
## End(Not run)