d78e5d4bfb7b395cc500293e255d3365 *CITATION
d767f6e1ce0bfe1cf5dd00b92f51744f *DESCRIPTION
21dd2c928d17e4f743215ab035394b8d *INDEX
868d4fda121fa1be700c2cce08ea8cd8 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
713326301a64a9f7782f544b1f6d3f78 *Meta/hsearch.rds
ff2b4fa2aa36d6c76f75727fcfade1a4 *Meta/links.rds
eac9652cf51f5260086769fc3c4e86b5 *Meta/nsInfo.rds
5dab1cca1e42232620750c410012ffa1 *Meta/package.rds
b7da089d88367721ac462347fa7bcba4 *Meta/vignette.rds
04482a221059efde1226037f94201a6f *NAMESPACE
2d932457d14fd8c7c5f1d6cff47da294 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantAnnotation
0031a0e4d2a0751abb3304e13d204d5d *R/VariantAnnotation.rdb
900012136d2ab25958b5076da53c916a *R/VariantAnnotation.rdx
516b3343dc68d663fac6a41d21e7c915 *doc/VariantAnnotation.R
dfa5fd2cbcb069a9b6f5730136ba998d *doc/VariantAnnotation.Rnw
40e22e0960f39301f51a8f3ad385130f *doc/VariantAnnotation.pdf
f900f6b0aef3b2cd12d04d41c3b1b206 *doc/filterVcf.R
d45aa9e2c736ae48706a388fa61770d4 *doc/filterVcf.Rnw
dacbf55a7541b6cae5b10f5d4525e367 *doc/filterVcf.pdf
879da333b138ca5d31f64b6639487e51 *doc/index.html
46e78a67f51161387c4c13aeefe80367 *extdata/chr22.vcf.gz
540ee7e114a2c3c9f9730610940ec47f *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
305019f4f621ba9ecd1126c527371e18 *help/AnIndex
a09b9c204887801cc81c5879d2529a40 *help/VariantAnnotation.rdb
584913737c739b087e3cebe9e07ada79 *help/VariantAnnotation.rdx
a18c1179dfe305d8a90ae8dab9d8fe70 *help/aliases.rds
5f8cb199f5cb1dfcfb9d00234ce94ec4 *help/paths.rds
36dcc1b60a1ac000917a1a81fb315ec8 *html/00Index.html
04ba313badb1891e56d4d1b5607ec53c *html/GLtoGP.html
67057e21442fce32f79e2e36132568d1 *html/PROVEANDb-class.html
76740878f9a8579a8a29c6c9d60b075d *html/PolyPhenDb-class.html
fdac13013e9f3df43fc2e78b5b619628 *html/PolyPhenDbColumns.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7e8ea0aed5480358fb4a04bfa407ebf6 *html/SIFTDb-class.html
e90e974e5f3a99d69e6e072450c8e75c *html/SIFTDbColumns.html
152714e84cdadd488c54e4860850b32a *html/ScanVcfParam-class.html
5e7741f05b0f470de7ba45dd390c4ef8 *html/VCF-class.html
e90025765e5cf7e4536511a9320f8b02 *html/VCFHeader-class.html
b3ed73c48a147ea63494c995eab2a44c *html/VRanges-class.html
61fce9790a253bd39e250a08c345403f *html/VRangesList-class.html
4b64a2a591217d635a14813bc335e1c8 *html/VariantType-class.html
1e43a5d24c98cefc8490e0222f6cfcdb *html/VcfFile-class.html
6981a2fbd9a9b23431689e9ec19f691f *html/defunct.html
4756c9afe8de2c54260a6f59164ab927 *html/filterVcf-methods.html
9346748c0380bfd027adf0c450cb5af2 *html/genotypeToSnpMatrix-methods.html
7e24e6c8da1ef0e8c06bdd55f0831095 *html/getTranscriptSeqs-methods.html
c8ead629731362bde0d548f814d6559d *html/indexVcf-method.html
4a5ccf70cfcd414960093742bc05388f *html/isSNV-methods.html
1b059e4e05f4b877c1168a0edc63cdac *html/locateVariants-methods.html
d7f1add5f388748497f3184ad71e9bb0 *html/predictCoding-methods.html
53b73bcda50ad49a2edf7e2fbefdab7c *html/probabilityToSnpMatrix.html
8fb185a8fc4e20f057b6c26be43bc34d *html/readVcf-methods.html
cf2dfb22eb2a01837bb18f5821f334f1 *html/scanVcf-methods.html
4d366c58f8b64f9a126428172b5c8ea7 *html/seqinfo-method.html
04be4d7e32d5d992b715b6989a5168d6 *html/snpSummary.html
ffa44c315cc83cdb481c7929737b0671 *html/summarizeVariants-methods.html
a45310af9527bb8cb43770a610ce5f67 *html/writeVcf-methods.html
1d32d2cb12dee46fba09d0f9d3a98c27 *libs/i386/VariantAnnotation.dll
6bfcf946baf99fecce62d8d78d0da0be *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
9ce56b3cbbb6829d3e3236a106046da0 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
0fbb3e914d7a97208d8d1eb8fcb93026 *unitTests/cases/buffer_realloc.vcf
992d76f76b4634d6ea263b873f92cbac *unitTests/cases/ex1-seq1-90.vcf
4619ce5ed3abf69b38c13f8a72ca9755 *unitTests/cases/expand.vcf
7be3dfdcd77d28fe84fdeb30ea096d58 *unitTests/cases/fewer-FORMAT-than-GENO.vcf
dfc226165c7c64d2e24a1fe952600cdd *unitTests/cases/meta_header.vcf
3d07a0b85a80b389b0ee5ba3dba11b13 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4fc8b2f12f8b054e888ce092bb5b5443 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
d08510e74b080b9d0830a1941740ea90 *unitTests/test_ScanVcfParam-class.R
fed1695a81a7ebc63ebe7aff1039c2f5 *unitTests/test_VCF-class.R
f794098e916c49a86454bb58fe55fdb1 *unitTests/test_VRanges-class.R
98f30f7a93c9bb3ea1605f693d02b569 *unitTests/test_expand-methods.R
ad687c9f6717a20333e98db69fe89286 *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
5c303ea47fa41a2fcc89f6c834c5d83e *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
5044be812d16c430cbc3a2451c10eba4 *unitTests/test_readVcf-methods.R
16a5eae70d0e330c6660e94f57fdf32f *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
118c0fdfd316bc754c56babc45b3bbdf *unitTests/test_vcfFields.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
