Promoter identification from large-scale TSS profiling data

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Documentation for package ‘TSRchitect’ version 1.13.5

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addAnnotationToTSR *addAnnotationToTSR*
addAnnotationToTSR-method *addAnnotationToTSR*
addTagCountsToTSR *addTagCountsToTSR*
addTagCountsToTSR-method *addTagCountsToTSR*
bedToTSS *bedToTSS*
bedToTSS-method *bedToTSS*
createSummarizedExperiment *createSummarizedExperiment*
createSummarizedExperiment-method *createSummarizedExperiment*
determineTSR *determineTSR*
determineTSR-method *determineTSR*
detTSR detTSR
detTSR-method detTSR
getBamDataFirstRead *getBamDataFirstRead*
getBamDataFirstRead-method *getBamDataFirstRead*
getBamDataLastRead *getBamDataLastRead*
getBamDataLastRead-method *getBamDataLastRead*
getFileNames *getFileNames*
getFileNames-method *getFileNames*
getTitle *getTitle*
getTitle-method *getTitle*
getTSRdata *getTSRdata*
getTSRdata-method *getTSRdata*
getTSScountData *getTSScountData*
getTSScountData-method *getTSScountData*
getTSStagData *getTSStagData*
getTSStagData-method *getTSStagData*
gsq2bed *gsq2bed*
gsq2bed-method *gsq2bed*
importAnnotationExternal *importAnnotationExternal*
importAnnotationExternal-method *importAnnotationExternal*
importAnnotationHub *importAnnotationHub*
importAnnotationHub-method *importAnnotationHub*
inputToTSS *inputToTSS*
inputToTSS-method *inputToTSS*
loadTSSobj *loadTSSobj*
loadTSSobj-method *loadTSSobj*
makeGRangesFromTSR *makeGRangesFromTSR*
makeGRangesFromTSR-method *makeGRangesFromTSR*
mergeSampleData *mergeSampleData*
mergeSampleData-method *mergeSampleData*
processTSS *processTSS*
processTSS-method *processTSS*
TSRchitectUsersGuide *TSRchitectUsersGuide*
tssObject *tssObject*
writeTSR *writeTSR*
writeTSR-method *writeTSR*
writeTSS *writeTSS*
writeTSS-method *writeTSS*