77a5ab20885f17af0e5a2668c6dcac74 *CITATION
f6a9ec70ddde72b515e265b371d8ad06 *DESCRIPTION
2dba24ee3b6e24150a397948d3793149 *INDEX
84dcc94da3adb52b53ae4fa38fe49e5d *LICENSE
393354f40516669612b25ab84db7003a *Meta/Rd.rds
3048db1cced48b453edace66382adb8d *Meta/demo.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c18435654be11b0d7b3edbbbcb857ef4 *Meta/hsearch.rds
47403c928bf93dd1b1f09897976ee1d6 *Meta/links.rds
f43387b9adb8909e50cd8b5dd696b214 *Meta/nsInfo.rds
9f0e78f88531e3b59ca75a77c1caf887 *Meta/package.rds
72393f4b4dc7170cebd9065752665f3a *Meta/vignette.rds
9a2ebaabe285548070bebd9b54eab1b3 *NAMESPACE
75ad17b929a0c6c28223dfb29fd573a2 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/TSRchitect
46b12717bfdcdeaecad783bd685731b9 *R/TSRchitect.rdb
25a7d538a44bdc4808d4d99270976ea3 *R/TSRchitect.rdx
f5805dadffd5152e2619ae35a149649b *doc/TSRchitect.R
d2f65ef90048d17d5873c95483505b3c *doc/TSRchitect.Rmd
5ddcc865002028db3684050c796b160c *doc/TSRchitect.html
bfd0a584adfb01c099c9d928101d9dfc *doc/TSRchitectUsersGuide.Rmd
10f10cd213103b95ce07389cfbec4874 *doc/TSRchitectUsersGuide.html
20067a1a3337f5222b7f21636189eccc *doc/TSRchitectUsersGuide.pdf
c6e15466d7cfe95ef57e9e9d1852885b *doc/index.html
034ea19993f7186c373194e0bc35e371 *extdata/AtEST.gsq
4bbc04bf3fa7d448ce5d9f0583e35499 *extdata/Perl/gsq2bed.pl
e17ffceede2bc48f9a5a3512a0700427 *extdata/bamFiles/sample1-rep1.bam
87621f78e1bfdf458aa25dcb54d4b687 *extdata/bamFiles/sample1-rep2.bam
398d997aa03940f301ecbac764d502ac *extdata/bamFiles/sample2-rep1.bam
818e50d63d16565c4ddc49a1a86a082a *extdata/bamFiles/sample2-rep2.bam
46892c21c3bcd179fad12c207800b9ea *extdata/bedFiles/sample1-rep1.bed
66fd74686aad44f5b11a0e3f69dba67f *extdata/bedFiles/sample1-rep2.bed
dec053f1f06ebd6b3d914ed8aebfa6f0 *extdata/bedFiles/sample2-rep1.bed
dcd74ac1a988e26a02be803f3400d0a3 *extdata/bedFiles/sample2-rep2.bed
d4c91c62eb8e92b482cedbf26d2785cc *extdata/gencode.v19.chr22.transcript.gff3
0aa19e9df72ce94539e5b2916395fc70 *extdata/tssObjectExample.RData
596744bdffb554f522c15e1f21b34b75 *help/AnIndex
f861c3f093ce02933b0fed33d2e9861e *help/TSRchitect.rdb
98c7c16c33c0f58b2d11ec72f6e0ae6d *help/TSRchitect.rdx
bd8fa52087fb75d80b4becca4882b0ee *help/aliases.rds
130f0ad7975c2c85fba8da2f602fbf45 *help/paths.rds
5b6c29176b023017f06ed94d51d6b9fa *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
85378f8de1609d152fe97776cd061708 *html/TSRchitectUsersGuide.html
dc7a08b65b45170cebb9c8fa852cd267 *html/TSRmshapeIndex.html
56db12af33377effc00576f5f7df8aab *html/TSRshapeIndex.html
8680cea5f37fb22d73ad9986c2af9dfd *html/addAnnotationToTSR-methods.html
7a88fb4b97b8a2dc842a4267bb2488f0 *html/addTagCountsToTSR-methods.html
9543fea0bb323e858da4ec082be09ed2 *html/bedToTSS-methods.html
e43962bffe21b96d6a5a1593a9c55b46 *html/createSummarizedExperiment-methods.html
a0a8e4e50537e1a9077c60efc4094b38 *html/detTSR-methods.html
9ffb938d8eb895032bfeaa177f7acc8c *html/determineTSR-methods.html
fb2c7744f96e8bf4936e3a99626bc93d *html/getBamDataFirstRead-methods.html
011977d80f91631ddd21c6c3e651a107 *html/getBamDataLastRead-methods.html
219448e5870df7f3deb8634430b1a872 *html/getFileNames-methods.html
1e1dd386b556e19ba90af21d9adbddd8 *html/getTSRdata-methods.html
15cc7b5ae9c08802e8dc105be678406e *html/getTSScountData-methods.html
628af0a656e0dc470c3ce869e1b0a047 *html/getTSStagData-methods.html
1b42dbffc2e976fc315f750bb8a7a220 *html/getTitle-methods.html
7166829e0bd795c4a5d6fea2b2506776 *html/gsq2bed-methods.html
7e105c00d29438532739afd5104008e7 *html/importAnnotationExternal-methods.html
a5be5de1e184b6389af70b1d1ef53fef *html/importAnnotationHub-methods.html
633e0171e85472ece1b64047102b9957 *html/inputToTSS-methods.html
84411adf7c451d869b72271c9482d337 *html/loadTSSobj-methods.html
dc1de6c1b47523b5a419ba310a4c2da8 *html/makeGRangesFromTSR-methods.html
8e1f2e1a2eadf64018c93c52789f1e08 *html/mergeSampleData-methods.html
b6ecff26489801a03a0173ca7dd0532b *html/prcTSS.html
3619d79a142597b608507491b9f9b378 *html/processTSS-methods.html
335cbcdcde5b0dc7e5618cd5144c4009 *html/tagCountTSS.html
f050ff1262a88a8136aae50ade6f8ecc *html/tsrCluster.html
f9daaf05af6bf49588c7b0d8927d8757 *html/tssArrayProperties.html
46dea5cf35016555718f87f275b32d41 *html/tssObject.html
12e5b7ae058cb70bad66cfbaad317f6e *html/writeTSR-methods.html
d63d9700bb2124a54c54de15274a25da *html/writeTSS-methods.html
