TSRchitectUsersGuide    *TSRchitectUsersGuide*
addAnnotationToTSR      *addAnnotationToTSR*
addTagCountsToTSR       *addTagCountsToTSR*
bedToTSS                *bedToTSS*
createSummarizedExperiment
                        *createSummarizedExperiment*
detTSR                  detTSR
determineTSR            *determineTSR*
getBamDataFirstRead     *getBamDataFirstRead*
getBamDataLastRead      *getBamDataLastRead*
getFileNames            *getFileNames*
getTSRdata              *getTSRdata*
getTSScountData         *getTSScountData*
getTSStagData           *getTSStagData*
getTitle                *getTitle*
gsq2bed                 *gsq2bed*
importAnnotationExternal
                        *importAnnotationExternal*
importAnnotationHub     *importAnnotationHub*
inputToTSS              *inputToTSS*
loadTSSobj              *loadTSSobj*
makeGRangesFromTSR      *makeGRangesFromTSR*
mergeSampleData         *mergeSampleData*
processTSS              *processTSS*
tssObject               *tssObject*
writeTSR                *writeTSR*
writeTSS                *writeTSS*
