S4 TPP2D Experiment Class

Description

S4 TPP2D Experiment Class

Value

an object of class tpp2dExperiment

Slots

configTable

data.frame.

idVar

character.

intensityStr

character.

fcStr

character.

nonZeroCols

character.

geneNameVar

character.

qualColName

character.

naStrs

character.

concFactor

numeric.

medianNormalizeFC

logical.

filterContaminants

logical.

minObs

numeric.

independentFiltering

logical.

fcThres

numeric.

optim_fun_h0

function.

optim_fun_h1

function.

slopEC50

logical.

maxit

numeric.

BPPARAM

character.

B

numeric

byMsExp

logical.

alpha

numeric.

tidyDataTable

data.frame.

modelParamsDf

data.frame

resultTable

data.frame

bootstrapNullDf

data.frame

hitTable

data.frame

Examples

tpp2dObj <- new("tpp2dExperiment")