# Generated by roxygen2: do not edit by hand

export(CpGtoRanges)
export(TCGAbarcode)
export(TCGAbiospec)
export(TCGAprimaryTumors)
export(TCGAsampleSelect)
export(UUIDtoBarcode)
export(UUIDtoUUID)
export(barcodeToUUID)
export(extractBuild)
export(filenameToBarcode)
export(findGRangesCols)
export(generateMap)
export(getClinicalNames)
export(getFileName)
export(getSubtypeMap)
export(imputeAssay)
export(makeGRangesListFromCopyNumber)
export(makeGRangesListFromExonFiles)
export(makeSummarizedExperimentFromGISTIC)
export(mergeColData)
export(mirToRanges)
export(oncoPrintTCGA)
export(qreduceTCGA)
export(sampleTables)
export(simplifyTCGA)
export(splitAssays)
export(symbolsToRanges)
export(translateBuild)
export(trimColData)
export(uniformBuilds)
import(methods)
importFrom(GenomeInfoDb,"seqlevelsStyle<-")
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,keepStandardChromosomes)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicDataCommons,cases)
importFrom(GenomicDataCommons,expand)
importFrom(GenomicDataCommons,files)
importFrom(GenomicDataCommons,filter)
importFrom(GenomicDataCommons,ids)
importFrom(GenomicDataCommons,results_all)
importFrom(GenomicDataCommons,select)
importFrom(GenomicFeatures,genes)
importFrom(GenomicFeatures,microRNAs)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,granges)
importFrom(GenomicRanges,makeGRangesListFromDataFrame)
importFrom(MultiAssayExperiment,"colData<-")
importFrom(MultiAssayExperiment,ExperimentList)
importFrom(MultiAssayExperiment,colData)
importFrom(MultiAssayExperiment,experiments)
importFrom(MultiAssayExperiment,metadata)
importFrom(MultiAssayExperiment,subsetByColumn)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,isSingleInteger)
importFrom(S4Vectors,isSingleNumber)
importFrom(S4Vectors,isSingleString)
importFrom(SummarizedExperiment,"mcols<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,mcols)
importFrom(SummarizedExperiment,rowData)
importFrom(rvest,html_attr)
importFrom(rvest,html_nodes)
importFrom(stats,as.formula)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(stringr,str_extract)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,read.delim)
importFrom(xml2,read_html)
