c5a4fac0770755ef4219eff8ff5d68d8 *DESCRIPTION
ff0c58e099d324882b6366f6e563cdf8 *INDEX
f335133d305ce62e9387f62ea8c6d667 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
e8e822ded41b8148277de1b99da7ec8f *Meta/hsearch.rds
ffd2f947bdac24373df5d8c05bb08551 *Meta/links.rds
847ab44ea4bbd0b106ffd4f63ade48e9 *Meta/nsInfo.rds
36508844e035bc966d5521d2b5e12c0d *Meta/package.rds
bc54fe648efb11d64518adf3b243e57e *Meta/vignette.rds
24e9c08932a70f2075092cde33a08806 *NAMESPACE
188521dc51287dda57889dd35ef026d4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/StructuralVariantAnnotation
dda25eb2f07c20c98a1cb96a455fa56a *R/StructuralVariantAnnotation.rdb
9fb95bc758348add1d1f22933d94985d *R/StructuralVariantAnnotation.rdx
1891dbf87ca9fce1945b16dd64840348 *doc/index.html
84040ad0382d4c1063764ca01a8f3a22 *doc/vignettes.R
613381b334bc5080887c5b3757c55ec2 *doc/vignettes.Rmd
e3da96b77a7fb2f3f9bdf226cfda4c46 *doc/vignettes.html
12ee44ba494bc06baa7369469700f7c8 *extdata/COLO829T.purple.sv.ann.vcf.gz
683caf164bb74e29552f0177e876add2 *extdata/breakdancer-1.4.5.vcf
feeaad3d5ec237cff7761c7d04431b78 *extdata/breakend.vcf
2ab83f00d360b12f5cece00c82e5c0b0 *extdata/crest.vcf
c972e2f7fde3e39dcafa159e96732617 *extdata/delly-0.6.8.vcf
351814da6dd730c526944416ce048706 *extdata/gridss-missingPartner.vcf
4927fa10b4842cfa4ba38c9d5fc7d8c8 *extdata/gridss-na12878.vcf
cc82ed7e26d2d0490714f9c52882a605 *extdata/gridss.bedpe
5e5ae0f5c15eef2943d75b9168031c47 *extdata/gridss.vcf
8cd93102afc733e1f81cd323eacf21c5 *extdata/manta-0.29.6.vcf
1cf2f3eda533b5cd761a71a78cac7ad7 *extdata/manta-1.1.1.vcf
cb53d99797872f13ba066e3551a6d3d2 *extdata/multipleAltSVs.vcf
7b54dafc7a0b36ddaa85c861e745b8f9 *extdata/na12878_chr22_Sudmunt2015.vcf
ebbaf305e07754a431a7200b122a8561 *extdata/na12878_chr22_crest.vcf
63206a566ee14bcb7fedd85e214a9f10 *extdata/na12878_chr22_hydra.vcf
489550bafad9c87b6441721b379966a6 *extdata/pindel-0.2.5b6.vcf
fbb8e101fb854f488c4f26df2b490451 *extdata/simple.vcf
a489a6898e1a6c617b09baa2f0fbc037 *extdata/tigra-0.3.7.vcf
a0a6d82bbcd08187186af68b4c339819 *extdata/unnamed.bedpe
27f53f9124a138ed7da6181719f34881 *extdata/vcf4.2.example.sv.vcf
79afebcf08a7447657a4e9feef4f1496 *help/AnIndex
364754f5d62445320d93331be4ca421d *help/StructuralVariantAnnotation.rdb
67829f5bebd8093d2453c6bc07494a86 *help/StructuralVariantAnnotation.rdx
7d056286c0f1f862552ae540ee0d6cd2 *help/aliases.rds
0f9830c8bacd79cd95a6bcf893a1fd88 *help/paths.rds
5d6796508ba47758dd94b78761b3c9e1 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
735ad647471e5a0c660bde13f786daaf *html/StructuralVariantAnnotation.html
e8fc7f62a784076354df8d827c41d32d *html/align_breakpoints.html
e419cd4c0a9cad7c33315dcdb2373aa9 *html/breakendRanges.html
255c76d23996171182f78ad443e5a528 *html/breakpointGRangesToVCF.html
40449eefd7acf7d84abd349cc62aa2fb *html/breakpointRanges.html
889ee58ac20cb4eab9f8de5cab3224d8 *html/breakpointgr2bedpe.html
92a173199ec366ccbb5dad63577388bb *html/calculateReferenceHomology.html
91bc5ef8e844979d22c954e89885cdb6 *html/countBreakpointOverlaps.html
950d2005d3b78b02f6ec2f9afd42bbd7 *html/dot-constrict.html
810848db2a063d67753bd4e20020b9eb *html/dot-isSymbolic.html
70622031124e312569a9cc6964997e35 *html/dot-pairwiseLCPrefix.html
ca93fc62568ff98890fa935c740fdc56 *html/dot-svLen.html
8d8320a242ace034a190169597670f13 *html/dot-testfile.html
4a4b38da559314b639ac932c215d6c94 *html/dot-testrecord.html
0064c06d681bab4e63f22fc7a0b2b3bd *html/dot-toVcfBreakendNotationAlt.html
3019c4021e7786d9cf795aa7a2f0825e *html/dot-unXStringSet.html
888d7625bd980b41b2eb9a4402e1b5a9 *html/elementExtract.html
7d86db53567b3011370cb4d544b6e46f *html/extractBreakpointSequence.html
286c77d2053c3f5cf92aac3204960bb7 *html/extractReferenceSequence.html
a0c138cec9d3dda4ffb1965c485c2ea0 *html/findBreakpointOverlaps.html
6501fa2bdfd01fa375223c35bcf3761b *html/findInsDupOverlaps.html
b68d70b81603c2372a680370de757a11 *html/grapes-na-grapes.html
f93f499e0dcd2eca99d4d0569cfa7ed1 *html/grapes-null-grapes.html
1f153515edb7449618854618718f11d7 *html/isStructural.html
a5898f249f1a3e0903271f24170c3c2a *html/isSymbolic.html
e20e87aa43db063fd90fba777ff3e692 *html/pairs2breakpointgr.html
8996de767e71ab0a2148eb9affef06a6 *html/partner.html
f9777c0d471d4196ffc707c5a63fbe4b *html/simpleEventLength.html
3be40e5472f0cd441b09e4c49e5f6310 *html/simpleEventType.html
