7fb8c2be9568b3aa606b1b88e5110c97 *DESCRIPTION
27b80f7f7185212dc706b536da0f13b5 *INDEX
e55c74d8f70184f9da50f9a3d3c5f523 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
a8d74b3b8970f217ad65a606c3b73bae *Meta/hsearch.rds
f114156e01e13a15456b881d6d2eb1b4 *Meta/links.rds
8deaf6d7301f3fe3c3271d6caf2d91e3 *Meta/nsInfo.rds
2e6b2ece15c4e822abf6e92ce5072d07 *Meta/package.rds
a62a6a2033d86073e3c5cc259dd7bd37 *Meta/vignette.rds
6feba8077718b0c668857b5d7b860d6d *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/SplicingGraphs
dc6884a28ddac5bc8dbc20429070f35b *R/SplicingGraphs.rdb
70e1bd6d4ccc45809b19858b8c559e40 *R/SplicingGraphs.rdx
8bf11584940c3bd7af494eb933047d44 *doc/SplicingGraphs.R
8e772f322a2f2ae586804ae50e60e6bf *doc/SplicingGraphs.Rnw
5f7ff84db907294e9d635bc5e74bfbc0 *doc/SplicingGraphs.pdf
88377b5fd65dbaaf32cf912ac99e20ac *doc/index.html
e927d6e86c26ef2f567f538e4d02c6bb *extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *extdata/toy_overlaps.txt
62072a44e72d0ea965e19a12820417ca *extdata/toy_reads.sam
ff355f3e1adcaa01590064536ff5380f *help/AnIndex
e05dbeda8043796969651883d97c25f4 *help/SplicingGraphs.rdb
f107bd1905b026d156086c842156dd37 *help/SplicingGraphs.rdx
7d556ac507f85e915990cdfdb5f34037 *help/aliases.rds
0a433c3183069f221a88db4bf98bec81 *help/paths.rds
9411c6d70fef6497422291f17967eb61 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2b75e26a99a938715a9092861f9d2f07 *html/SplicingGraphs-class.html
de8371ed34be9e2ed74c73ec47f8eda7 *html/SplicingGraphs-package.html
2e1021e49775c6bc98013eb6c78011ed *html/TSPCsg.html
83e167b40cf78633c6e7f1729ebba049 *html/assignReads.html
26d7fec07f8cc9f88cd875a8f2b821f4 *html/bubbles-methods.html
873c2a4c50fb17a93990554eef632824 *html/countReads-methods.html
fa49d17d1b290a8066a6a43c7cb8e052 *html/plotTranscripts-methods.html
b3700ff75edd75e4866c771436f6b3b4 *html/rsgedgesByGene-methods.html
b0031d79fe2280625a2014de6a3ec820 *html/sgedges-methods.html
7509596a41d8d33f1299f4af2f3417c7 *html/sgedgesByGene-methods.html
c1f395802ae20a6ed151e68c4e15ba47 *html/sgraph-methods.html
af1155732e60e84433539f14da02f686 *html/toy_data.html
61fc206223a3ee86ed0e884374373904 *html/txpath-methods.html
f22485f979fcbadb1e6d5c1498f2de11 *scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *scripts/makeTSPCsg.R
1bba688669d20686db16f84dc56a8e2f *unitTests/test_countReads-methods.R
