| nkiResults {SigCheck} | R Documentation |
sigCheckAll using the
breastCancerNKI dataset.
This object represents the results lists returned by a call to
sigCheckAll. It is used by the vignette accompanying the
SigCheck package as an example result. It was derived by
running the code in the example below.
data(nkiResults)
## Not run:
# This is how nkiResults is built
library(breastCancerNKI)
data(nki)
nki = nki[,!is.na(nki$e.dmfs)]
data(knownSignatures)
check <- sigCheck(nki, classes="e.dmfs", survival="t.dmfs",
signature=knownSignatures$cancer$VANTVEER,
annotation="HUGO.gene.symbol",
validationSamples=which(nki$series=="NKI2"))
nkiResults <- sigCheckAll(check,iterations=1000)
## End(Not run)
# Example usage of nkiResults
data(nkiResults)
sigCheckPlot(nkiResults)