aeab950bee58fcca0c51dab3766b6a3e *CITATION
ac7ffeadf3847cdd17755906dc5d3fb5 *DESCRIPTION
eb4e7591368c76f0496fbdb16d0d016b *INDEX
ccb870e2d825ea05aedc3f1297deab22 *Meta/Rd.rds
93d9433e324e72b54bfcdf768f89078f *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
1181db2b8e74a9810a1001554e1b82d1 *Meta/hsearch.rds
346e7d7369a4700b0fbb03b842a1cea7 *Meta/links.rds
a10b4b3dc796709ff712f2c0407c1e78 *Meta/nsInfo.rds
20f315fd3524c070d9954b18f87242e9 *Meta/package.rds
c03389d26cdc79f96e898c0d41bc7e0d *Meta/vignette.rds
4c068cc3d0d28139f5ef50700dd174bb *NAMESPACE
eee0094f742a2e898fa42f2687ae08d5 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SeqGSEA
f9a5040794ba277b6fe6c16d45634706 *R/SeqGSEA.rdb
2df584831c7fdc768ea7ebefbbc4eeec *R/SeqGSEA.rdx
0de951c8acb635491137dd18ea274d3c *data/DEscore.RData
f428a2fb01a1897186df10ac9200cb88 *data/DEscore.perm.RData
01eb20f550590c90a09c3c66be19cfe3 *data/DSscore.RData
0dde568ce46206f2cdfd093e657ec717 *data/DSscore.perm.RData
1329bfa58cd12a17be862b75e63f0d28 *data/GS_example.RData
32415601bef23b9cd7a3f287920787e2 *data/RCS_example.RData
503f9f527192840a4197a568c15c9523 *doc/SeqGSEA.R
e1ae461c8dd63eb42cd0011451272c01 *doc/SeqGSEA.Rnw
4577db8395b471e32336bbe26b3bc2e0 *doc/SeqGSEA.pdf
afa83dbacb8ca9adc13efb1d47d56ee4 *doc/index.html
aa55e94bc8a566642e2185b96a3af157 *extdata/SC02.exonCnt.txt
0db4255cfc2712875daef3b4cad2fb30 *extdata/SC03.exonCnt.txt
a5b3f6a1fd87583872c6e125787769a0 *extdata/SC06.exonCnt.txt
46c91a7af23910fcec920eba62d31181 *extdata/SC08.exonCnt.txt
7e5ce78db9689017625c617ef766d9a7 *extdata/SC09.exonCnt.txt
50040700402df45704b7818bdaa5939c *extdata/SC11.exonCnt.txt
8e9b647d49feb3eeebf4f08cacfaa264 *extdata/SC13.exonCnt.txt
744f526772bc3c5e2339960a069fc5b9 *extdata/SC15.exonCnt.txt
9cbbedac1f57b91f4d54fcd0dcbea92e *extdata/SC19.exonCnt.txt
cf06c735cdfcd748ae4952306916f00b *extdata/SC23.exonCnt.txt
82ea07828e987a34016fd6df0a0ae8b7 *extdata/SN02.exonCnt.txt
69dbf83514ff2e35b2e049fb682598b9 *extdata/SN03.exonCnt.txt
d7d5badfedd65d3be5afc63b7b8ad767 *extdata/SN06.exonCnt.txt
4d1b6d41d721cb6e4c7568da2f374976 *extdata/SN08.exonCnt.txt
92d7d1a7b75d1553e25fd7c6716185da *extdata/SN09.exonCnt.txt
56e14a678cad226729b15bfe71ebcdb8 *extdata/SN11.exonCnt.txt
b55cbbb76d20758c07cb8acadab0bac6 *extdata/SN13.exonCnt.txt
ba8e84b422451b2cb406e271f6ecf700 *extdata/SN15.exonCnt.txt
e4de0cb79dae4a7617e82b961cba6c14 *extdata/SN19.exonCnt.txt
45b051c29bb812d73224c2e5db2e33d6 *extdata/SN23.exonCnt.txt
99a21bc95ce21d5613695746794ff2c3 *extdata/geneCounts.txt
e10c7313a4977ab1016ee89dca648b14 *extdata/gs_symb.txt
c4beb55cebd8c597c3193a087ae50783 *extscripts/count_in_exons.py
2849d48898b0f98630609b8806b285fc *extscripts/prepare_exon_annotation_ensembl.py
3fd83cc194195f2ccbff8d751d4c7463 *extscripts/prepare_exon_annotation_refseq.py
3bcbbcf1c2ac6c414599721cd3b11fa7 *help/AnIndex
69ca4409764cb07638be2916d92cca66 *help/SeqGSEA.rdb
5d50696b415996b1e7375118d2175608 *help/SeqGSEA.rdx
3c9838e14d45bc840aa20ebc036e9a04 *help/aliases.rds
26650b7e9e065662fc8cbc5b209bdb13 *help/paths.rds
e04523d8c6c66b6cdd1076cbed9c6243 *html/00Index.html
e6ea357a9145c0f0566e49d0e623c51b *html/DENBStat4GSEA.html
aa3a7da0938eef004c19bf71d6620141 *html/DENBStatPermut4GSEA.html
ca1a4a647ea5430ce2c69cbc9de43074 *html/DENBTest.html
19a36f4ba4caddfc400aa73d056d1969 *html/DEpermutePval.html
7cb9d189e8c283d2af80494cd42af0b5 *html/DEscore.html
5d8282baa08ffd8cbf4b0133f62dbb35 *html/DSpermute4GSEA.html
e3ae9ba05807345136c3780ec6116a91 *html/DSpermutePval.html
dfc0e891b7625fb3ca8fdf29943b066d *html/DSresultExonTable.html
f5d0e170d331f70894282764189b474a *html/DSresultGeneTable.html
754afd60b102b028f94337fcf56ea268 *html/GSEAresultTable.html
53242bfc54a335215807a37098af4b86 *html/GSEnrichAnalyze.html
48646f97ad5eb528525be31cf46a294c *html/GS_example.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
08e2b03ae6a8ddc3c100c9182b08cbd4 *html/RCS_example.html
41a4112542d29a333b8d07fa7e4456b5 *html/ReadCountSet-class.html
3d48d1bfa2add8a0960c117780cb80cc *html/SeqGSEA-package.html
7402bed9781fc78ffdcab59c22512c86 *html/SeqGeneSet-class.html
92e7403c1be49af2ace84e4a4f61e2f8 *html/calES.html
22c5a03bc1144fc0cc5dcbcc5e4a54b2 *html/calES.perm.html
5ce2f522f4acb400263b125de156cad6 *html/convertEnsembl2Symbol.html
f7afaa95df5d306cb8cc6dbad9ae2211 *html/convertSymbol2Ensembl.html
6606e6d07d82fc14c33656d1628ce529 *html/counts-methods.html
13576136a538e1c35b011ef602b14576 *html/estiExonNBstat.html
733408d68689065823d49a8471eb185e *html/estiGeneNBstat.html
a97bfa794b712c93be2ed7f664a87f7a *html/exonID.html
ea82a4a0939000fe943d680a25d7de4b *html/exonTestability.html
7031e9ac49aa077e9237b4d68e31ff1b *html/geneID.html
e75c3ac983f65c390d02ffd7610aa821 *html/geneList.html
854a5c2e33dea3fe5ea1d9243749754c *html/genePermuteScore.html
bb33d3e0dd1cbb9ab329edf47ca5e81d *html/geneScore.html
ceea1c4e2b4bef4c222ba2f790f153b6 *html/geneSetDescs.html
09847a512bb3a249f697dd2d111283a5 *html/geneSetNames.html
fc8256523dc5f09340419f083db90263 *html/geneSetSize.html
cd8f996bc18bbcbb6f95433c4c266c92 *html/geneTestability.html
b3070a066ef999dcd76fbd6f48769825 *html/genpermuteMat.html
9d6ed55110ab448fbf4833d38c00a734 *html/getGeneCount.html
c28bbeb61dcf724c14b142ab5948480f *html/label.html
5f2dfa3d24e719f9ad62165227de3bf5 *html/loadExonCountData.html
b6baa89a6804754c5198b1cd737b19da *html/loadGenesets.html
a59e39b819e7767d69c2a5bed7d551fa *html/newGeneSets.html
794e5476caaab7e730ae12bcddee639e *html/newReadCountSet.html
d52a94f99301dcda792671d1726b5fb7 *html/normES.html
c2882efcaa6164e726921779820527ed *html/normFactor.html
ac0563288f98b16fe0088a67100e7180 *html/plotES.html
a2b2b67b1db0fa036d7587cb5f5972eb *html/plotGeneScore.html
30fc1edd18a2b108198d42a7afe67048 *html/plotSig.html
dcbebba6b157e98e9ac443cdc62e6399 *html/plotSigGeneSet.html
ab04ccef8aa5fb81afe593f3ac3e0b3f *html/rankCombine.html
78b31d96b9d9452ea3a7c5c20ad581f4 *html/runDESeq.html
61da2c06fa1ed7674af83003420c346e *html/runSeqGSEA.html
28ddd97cba31522b55febccba3c7a6bd *html/scoreNormalization.html
a3b40ffce530c99850347aef01d5879d *html/signifES.html
565d0eb587d55e0b757f6fac509ea34a *html/size.html
18c7671f8ce1701ff477580a20318c36 *html/subsetByGenes.html
ffce6a590af470556bb1267dae424cbc *html/topDEGenes.html
3df497ec2cabdef76597e23891e9bee3 *html/topDSExons.html
c7adc257843436e832854ec7dbd9a23b *html/topDSGenes.html
f3c579418fbe87aaa9ae0467eb6328a8 *html/topGeneSets.html
b591509f16a1ae99485db7af90a3bf34 *html/writeScores.html
c5c3511e7b2daebdf08f4df574284662 *html/writeSigGeneSet.html
