subsetByGenes {SeqGSEA}R Documentation

Get a new ReadCountSet with specified gene IDs.

Description

Get a new ReadCountSet with specified gene IDs.

Usage

subsetByGenes(RCS, genes)

Arguments

RCS

a ReadCountSet object.

genes

a list of gene IDS.

Value

This function returns a new ReadCountSet object, with changes in slots assayData, featureData, featureData_gene, and permute_NBstat_exon and permute_NBstat_gene if they have been calculated.

Author(s)

Xi Wang, xi.wang@newcastle.edu.au

See Also

newReadCountSet, ReadCountSet

Examples

data(RCS_example, package="SeqGSEA")
RCS_example
genes <- c("ENSG00000000938", "ENSG00000000005")
RCS_sub <- subsetByGenes(RCS_example, genes)
RCS_sub
[Package SeqGSEA version 1.27.0 Index]