R: rnb.set.annotation.and.cpg.stats

rnb.set.annotation.and.cpg.stats {RnBeads}

R Documentation

rnb.set.annotation.and.cpg.stats

Description

wrapper for rnb.set.annotation to accept the region format as output by annotation(rnb.set). Additionally, CpG statistics are added to the annotation.

Usage

rnb.set.annotation.and.cpg.stats(
  type,
  regions,
  description = NULL,
  assembly = "hg19"
)

Arguments

`type, description, assembly`	Parameters handled exactly as in `rnb.set.annotation`
`regions`	a data.frame handled similarly as by `rnb.set.annotation` with the exception that the genomic location columns should be specified using upper case first letters

Value

Invisibly, TRUE if an existing annotation was replaced and FALSE otherwise.

Author(s)