rnb.export.all.annotation {RnBeads}R Documentation

rnb.export.all.annotation

Description

Wrapper for exporting all annotation sets

Usage

rnb.export.all.annotation(
  out.dir,
  types = c("CpG", rnb.region.types(assembly)),
  assembly = "hg19",
  format = "bed"
)

Arguments

out.dir

The directory to write the files to

types

One-element character vector giving the name of the region annotation.

assembly

Genome assembly of interest. See rnb.get.assemblies for the list of supported genomes.

format

output format. currently only "bed" is supported.

Value

TRUE, invisibly.

Author(s)

Fabian Mueller

Examples


logger.start(fname=NA)
rnb.export.all.annotation(tempdir(),c("genes","promoters"))
[Package RnBeads version 2.5.0 Index]