R: rnb.execute.tnt

rnb.execute.tnt {RnBeads}

R Documentation

rnb.execute.tnt

Description

export RnBSet to various output data formats

Usage

rnb.execute.tnt(
  rnb.set,
  out.dir,
  exp.bed = rnb.getOption("export.to.bed"),
  exp.trackhub = rnb.getOption("export.to.trackhub"),
  region.types = rnb.getOption("export.types"),
  ...
)

Arguments

`rnb.set`	`RnBSet` object
`out.dir`	output directory.
`exp.bed`	A character vector indicating which data types should be exported to UCSC. Possible values in the vector are `bigBed` and `bigWig`. If `NULL`, UCSC export is disabled
`exp.trackhub`	file types which should be exported to a trackhub structure.
`region.types`	a character vector indicating region types to be exported
`...`	Arguments passed to `rnb.export.to.trackhub`

Value

a list containing information on the export

Author(s)

Fabian Mueller

Examples


library(RnBeads.hg19)
data(small.example.object)
logger.start(fname=NA)
rnb.execute.tnt(rnb.set.example,tempdir())

[Package RnBeads version 2.5.0 Index]