ReactomeAnalysisResult - plot_gsva_pathway

Description

Plots the expression of a specific pathway from a ssGSEA result.

Usage

## S4 method for signature 'ReactomeAnalysisResult'
plot_gsva_pathway(object, pathway_id,
  ...)

Arguments

Value

A ggplot2 plot object

See Also

Other ReactomeAnalysisResult functions: get_result, names,ReactomeAnalysisResult-method, open_reactome, pathways, plot_correlations, plot_gsva_heatmap, plot_volcano, reactome_links, result_types

Examples

# load the scRNA-seq example data
library(ReactomeGSA.data)
data(jerby_b_cells)

# perform the GSVA analysis
gsva_result <- analyse_sc_clusters(jerby_b_cells, verbose = FALSE)

# create the plot
plot_obj <- plot_gsva_pathway(gsva_result, "R-HSA-389542")