R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data

Documentation for package ‘Rcade’ version 1.29.0

constructRcadeTable	Construct Rcade Table
countReads	Count Reads
defineBins	Define Bins
diffCountsBaySeq	Differential Counts wrapper - BaySeq
exportRcade	exportRcade and ...
exportRcade-method	exportRcade and ...
exportRcade-methods	exportRcade and ...
getChIP	Rcade Class
getChIP-method	Rcade Class
getChIP<-	Rcade Class
getChIP<--method	Rcade Class
getDE	Rcade Class
getDE-method	Rcade Class
getDE<-	Rcade Class
getDE<--method	Rcade Class
getRcade	Rcade Class
getRcade-method	Rcade Class
getRcade<-	Rcade Class
getRcade<--method	Rcade Class
plotBB	Rcade Class
plotBB-method	Rcade Class
plotBBB	Rcade Class
plotBBB-method	Rcade Class
plotMM	Rcade Class
plotMM-method	Rcade Class
plotPCA	Rcade Class
plotPCA-method	Rcade Class
Rcade-class	Rcade Class
RcadeAnalysis	Rcade Analysis
RcadeSTAT1	Rcade object - STAT1 data
RcadeTrack-class	RcadeTrack Class