| FirehoseGISTIC-class {RTCGAToolbox} | R Documentation |
An S4 class to store processed copy number data. (Data processed by using GISTIC2 algorithm)
## S4 method for signature 'FirehoseGISTIC' isEmpty(x) ## S4 method for signature 'FirehoseGISTIC' updateObject(object, ..., verbose = FALSE)
x |
A FirehoseGISTIC class object |
object |
A |
... |
additional arguments for updateObject |
verbose |
logical (default FALSE) whether to print extra messages |
isEmpty: check whether the FirehoseGISTIC object has
data in it or not
updateObject: Update an old FirehoseGISTIC object to
the most recent API
DatasetCohort name
AllByGeneA data frame that stores continuous copy number
ThresholdedByGeneA data frame for discrete copy number data
PeaksA data frame storing GISTIC peak data. See getGISTICPeaks.