| plateView {RTCA} | R Documentation |
Plots a E-plate in RTCA assays in one plot to convey an overview of the plate
plateView(rtca, ylim, titles,...)
rtca |
An object of |
ylim |
ylab lim |
titles |
Titles of sub-figures representing each well. If
missing, the function seeks whether a Well column is
available in the pData of the RTCA object, and if so, its value will
be used. If not, the sample names (by |
... |
Other parameters passed to the |
For now the function only supports the visualization of a 96-well E-plate.
The plate view plot draws lines indicating cell index (or its
transformations) in a birdview. When ... are not specified,
default color, line style and width are used. col,lty
and lwd can be a vector, and if needed they will be expanded
to have the same length as wells.
NULL, the function is called for the side effect
Jitao David Zhang jitao_david.zhang@roche.com
RTCA for data structure, plot for
the basic plot function.
require(RTCA)
ofile <- system.file("extdata/testOutput.csv", package="RTCA")
rtca <- parseRTCA(ofile)
## Not run automatically, because of 'margin too large'
## plateView(rtca)
## plateView(rtca, lty=2)
## plateView(rtca, col=rep(1:8, each=12))
rtca.skip <- parseRTCA(ofile, maskWell="H[0-9]{2}")
## plateView(rtca.skip)