| keggPathwayNames {ROntoTools} | R Documentation |
Obtain KEGG pathway titles
keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)
organism |
organism code as defined by KEGG |
updateCache |
re-download KEGG data |
verbose |
show progress of downloading and parsing |
A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.
Calin Voichita and Sorin Draghici
kpn <- keggPathwayNames("hsa")
# to update the pathway cache for human run:
# kpn <- keggPathwayNames("hsa", updateCache = TRUE)
# this is time consuming and depends on the available bandwidth.
head(kpn)