RIVER                   RIVER: R package for an implementation of an
                        extensible predictive model for combining whole
                        genome sequences with molecular phenotypes to
                        identify high-impact rare variants.
appRIVER                Application of RIVER
evaRIVER                Evaluation of RIVER
getData                 Get coordinated data from a compressed file for
                        RIVER
getFuncRvFeat           Posterior probabilities of FR given G
getFuncRvPosteriors     Posterior probabilities of FR given G and E.
integratedEM            An iterative expectation-maximization algorithm
                        for RIVER
mleBeta                 Maximum likelihoood estimate of beta.
mleTheta                Maximum likelihoood estimate of theta.
plotPosteriors          Draw scatter plots of posterior probabilities
                        from both RIVER GAM in terms of outlier status.
testPosteriors          Test posterior probabilities of FR given G and
                        E
