d899626bfdd384dd91c8b8199e8faa4f *CITATION
70443c37df04fbffbdf99f18673c7624 *DESCRIPTION
1dbe7b0ff56e77e3512ff1a7ebb7c9a0 *INDEX
4eac6ab3aa1078cf95e81dc4f3b836f5 *Meta/Rd.rds
67aed9ddf4cfcdf16c4cb112b5f7dbab *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
476fcae17860f1e9304d5db55cbe47e7 *Meta/hsearch.rds
b52c74de288d4ee5e238971b275c2e2b *Meta/links.rds
132e5520024611696e059e81b219e72c *Meta/nsInfo.rds
a96532466420a6dc309ed6c7fc76a3ed *Meta/package.rds
d8f7311fbbb92cfe6ccd97a34490ebea *Meta/vignette.rds
58c0afe02db9cfda1cef65bbe6f36f92 *NAMESPACE
200b15327638f2e7195e16f75e71a1b8 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RCAS
d82179f454eb0b5da93e803285b10065 *R/RCAS.rdb
18038096e4e92625efdd7b71e6476fb6 *R/RCAS.rdx
de31c670955830cfd0b82e1e0ac37798 *data/Rdata.rdb
e821afda2cafe13957f6368badb579dd *data/Rdata.rds
c9a3fa5f0e48120b660470b78600c9a9 *data/Rdata.rdx
aa61ceef33ed2d9e60b6599aa703e650 *doc/RCAS.metaAnalysis.vignette.R
fe54a2d6bc82f877aea6d5309fd7b999 *doc/RCAS.metaAnalysis.vignette.Rmd
b3c9f23f6eb86bf0580c54adb99c174c *doc/RCAS.metaAnalysis.vignette.html
87c466f3764b1994adbdae9f8aca454c *doc/RCAS.vignette.R
e44b52c4cfa013f23d6093d8e777dc00 *doc/RCAS.vignette.Rmd
872a17b3354301bc2e036fca88b5dec5 *doc/RCAS.vignette.html
247e560902e4d56eb3cc2fe9bec32180 *doc/index.html
4f8573e5f8b697319117c88327a4a236 *extdata/EIF4A3Sauliere20121a.bed
2779ca3ab60fcb8e560e86978c5aa1d2 *extdata/EIF4A3Sauliere20121b.bed
32aa8a32aa4b0b1b69dd340437d6e924 *extdata/FMR1_Ascano2012a_hg19.bed
d4d7442832f9b1d40ed3bb589326839a *extdata/FMR1_Ascano2012b_hg19.bed
5ae985d0d00b8dbc5c4e51481d2799b4 *extdata/FUS_Nakaya2013c_hg19.bed
53ec61cdf36a09a61f64ca31fdf0a0ae *extdata/FUS_Nakaya2013d_hg19.bed
2af4c54bf647b7e46dec40972101443e *extdata/hg19.RCASDB.sqlite
f0de64b19c59a7b202c8faff4d599ace *extdata/hg19.sample.gtf
99fb8d5b4e2fc1a11b4e92d5bd994d05 *extdata/hg19.sample.gtf.granges.rds
aa87ec9a0e15f7849d72747634b911ce *extdata/msigdb_test.gmt
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile.bed
8cea927d9a40a56fbdb778eae43f81e5 *extdata/testfile2.bed
833910a2a991e1a7f208a0b24c53e887 *help/AnIndex
bfa2192a7ab861253523e33ae1a98c98 *help/RCAS.rdb
8e25b6377e425c34e35bae3461d97c37 *help/RCAS.rdx
eba6cec166e3c89ffa8d2ce9214a5388 *help/aliases.rds
c302aa1f25538986630df1c33168cfac *help/paths.rds
abaab913e8d1a631b12ee71c7430623d *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
8a238763668f5152750a3b6318605989 *html/calculateCoverageProfile.html
e157c722d7aa4b0bd3546abc94b5c54e *html/calculateCoverageProfileFromTxdb.html
54419ff90134e99b5acd0b4578c923d5 *html/calculateCoverageProfileList.html
8ce64422cbe40b777dfb84846ed9c0c1 *html/calculateCoverageProfileListFromTxdb.html
996d2925753055b545413f35bea3bee9 *html/checkSeqDb.html
17d3b0257ff675bf561afadb24f7d2af *html/createControlRegions.html
188792ee224a7f297f7a12642d07813b *html/createDB.html
b88eedd34d41a5a38dca9ca63736dc88 *html/createOrthologousGeneSetList.html
bd2ac246f97cd7c089de31be6d9633ab *html/deleteSampleDataFromDB.html
93105b2937927571f10848080d775357 *html/discoverFeatureSpecificMotifs.html
4b9ea328b7cb523f97ff8b4f4f919292 *html/extractSequences.html
4352f51dc0ae24bc0fd31bc9d0915e64 *html/findDifferentialMotifs.html
ba383eb89fb7a64e8c827712d91744d1 *html/findEnrichedFunctions.html
4359d5a437ec7c1865d2feae43a7f6e4 *html/generateKmers.html
29b9c512303f5daf94b01c6af8729118 *html/getFeatureBoundaryCoverage.html
169a8cc92e8efa7e1497e46b064b3049 *html/getFeatureBoundaryCoverageBin.html
2d153de8d7b56d6bb1140744e8106bc1 *html/getFeatureBoundaryCoverageMulti.html
b5b3ccab65182f3e5624ddec9348145c *html/getIntervalOverlapMatrix.html
397f5e7abdb31988dc110b5a9a2280c4 *html/getMotifSummaryTable.html
891db09fcf94dc7257c6214be5a1bf02 *html/getTargetedGenesTable.html
415f788e498926456ef3d442538e0bcd *html/getTxdbFeatures.html
73ea30af08d4954c97e3d23379cec0f3 *html/getTxdbFeaturesFromGRanges.html
c2669e566b165395bd53708c4550ab74 *html/gff.html
db5f008c3f6baf6de39116846bebf0be *html/importBed.html
d741d7eff26dcdbeaf5eb07a7232bcad *html/importBedFiles.html
d4618fd2748db11bb4498ac44bab7bda *html/importGtf.html
9d1ebdc40ed9e7e91b1c71dc645f92ca *html/parseMsigdb.html
b46d7dcb4ba7bfad8b74c4e5d5495d31 *html/plotFeatureBoundaryCoverage.html
78922cb78aedf49f461c0b1a9a30ae60 *html/printMsigdbDataset.html
36ad8b11e20c83c3167c0c96cd0ad2e2 *html/queryGff.html
c496a7c0d2b6575dff4ce11b572d5ea4 *html/queryRegions.html
8e428b9868649e5c196378b6275e4c02 *html/retrieveOrthologs.html
c73d437ef3d4019ff85b7dfdd4f58283 *html/runGSEA.html
6752e6a3bc3f030e0048af9b4cb26e2d *html/runMotifDiscovery.html
d46e67b86fcd0816839ff5334e473378 *html/runMotifRG.html
2c311a316ec0f6a20998e0b0851cd225 *html/runReport.html
1af517be62ad8b1f6d4aa29e8e593c4d *html/runReportMetaAnalysis.html
8c88a6ef9cea2aa184e1fd071db75398 *html/runTopGO.html
8c20dbf3caad8e2bc2a0e29cfbad2562 *html/summarizeDatabaseContent.html
7bac2f19de85efa6d3dcb5a76d3f0d06 *html/summarizeQueryRegions.html
6e3d8e68258ef657c721e815cdc2d379 *html/summarizeQueryRegionsMulti.html
053cf68e09070e277a798b0736fb7874 *reporting_scripts/footer.html
b1442cb874099cb5af45301431024ee0 *reporting_scripts/header.html
68c09e9fe42599d67e60a5f1360dfab9 *reporting_scripts/report.Rmd
a09a306dbdd05abf6f6f854d2cb58f14 *reporting_scripts/reportMetaAnalysis.Rmd
