makeGRangesOutput {PICS}R Documentation

Export a PICS object to GRanges

Description

Export a PICS object to GRanges

Usage

makeGRangesOutput(
  obj,
  type = "fixed",
  length = 100,
  filter = list(delta = c(0, Inf), se = c(0, Inf), sigmaSqF = c(0, Inf), sigmaSqR = c(0,
    Inf), score = c(0, Inf))
)

Arguments

obj

A PICS object. The output of the PICS function.

type

A character. One of "fixed", "bed", "ci" or "wig".

length

A numeric. The length of the region around the center (mu). Only used when type = "fixed.

filter

A list. Additional filtering options.

Value

A GRanges object.

See Also

PICS

[Package PICS version 2.31.5 Index]