84e60024b80dbe4fdd18cf20efd1a6a3 *CITATION
6bb75737b32858a713060bfbd54d2fe6 *DESCRIPTION
2e28c59f534352460308db525f1309a8 *INDEX
75baac41dcd82365fd36e390eafe2a49 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c2ed806c0190d98ba01b3afc5f2ee9a5 *Meta/hsearch.rds
acb4a8cfb8cee80cb11e7963c0812928 *Meta/links.rds
51bd2d12e132be673bfb3d9f021cc3a9 *Meta/nsInfo.rds
dbd72dd09ca9a1bc82c7594f6f28bc99 *Meta/package.rds
bcbdc7a48aa1a9ef62d30bc7932c9c55 *Meta/vignette.rds
ebdbeb4d09eeabe3da87e2942a3dc329 *NAMESPACE
e57f59556f85613172e597d16f9d0479 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/PGA
4f2b696d7874a22b416f7ad5c8094b5f *R/PGA.rdb
b5f1abf2be8b157f069dcd8fe6f57c63 *R/PGA.rdx
da744d2fd1ce9ea8082ead76055bd1ee *doc/PGA.R
8fe205eac3dc953585f2beca1bc4a2d2 *doc/PGA.Rnw
8ac7705eb37ca19a30dd284b0b9ab4d4 *doc/PGA.bib
ae4bf4cef3d80011861ad1e54e65504e *doc/PGA.pdf
c946a4e9edacdc559c6b907704244b98 *doc/index.html
d2d3001867978814dbb4f00d42de4619 *extdata/annotation/exon_anno.RData
9dada94eeb9674f03ed9b635c52cba72 *extdata/annotation/ids.RData
db7bedb40cc3d176b8adcb26cd2b7dc4 *extdata/annotation/procodingseq.RData
d1736ea15c31f160d149ed72a3e0baed *extdata/annotation/proseq.RData
b628aedf208c94ce986553216beb0e64 *extdata/annotation/splicemax.RData
90e65f32186a16153d5eec36bec09147 *extdata/annotation/txdb.sqlite
573459978f57f4b27cf015f8c1e0c987 *extdata/fusion/star-fusion_example_input.tsv
3aafce959a5cf5cdf207215ec236bbe2 *extdata/input/PGA.vcf
51fc19ac042cc844740c53b8d9cdf5ec *extdata/input/Trinity.fasta
671180bb64135edd17d9aa1e9e943063 *extdata/input/junctions.bed
9dff2ad9f7ff0e0eb8e05242ad5d8950 *extdata/input/mascot.dat
a9121d2732844083edb4558ab53cfb1d *extdata/input/msgfplus.mzid
1268f9781323037abfb7413176f8d76d *extdata/input/pga.mgf
8552639adf7bd23addfbb4dab285c0cd *extdata/input/transcripts.gtf
31035d33dde2f7183e5602e37e33bf80 *help/AnIndex
c2c71f342dc4ccf6bf4a778008c86c85 *help/PGA.rdb
912899daa5e405d5c76c8ec8ea1a2acc *help/PGA.rdx
2849b8755bca43352f964ef9fe0d5fa6 *help/aliases.rds
f3d608222b08d6ec20b4d81f1e6b6168 *help/paths.rds
4f0650d527b091876266f26a71ba0201 *html/00Index.html
4fc646048ac8e9e55c60b216935a4bbb *html/PrepareAnnotationEnsembl2.html
c8224c876398530fee823bb12ad9f986 *html/PrepareAnnotationRefseq2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1806d05e186b2478c5798e5b342af11e *html/addGeneName4Ensembl.html
f5277fc4299202681533495b50060433 *html/buildFusionProteinDB.html
f1e3a02525c5c1fd38923a49f9373298 *html/createProDB4DenovoRNASeq.html
b4119429f1481751464c613d72098f4c *html/dbCreator.html
5cc1cc9e8e40217646d8d29beffdf923 *html/easyRun.html
88780fb5526852cc1f4a8e65a55bf281 *html/parserGear.html
50d686f548a80bcd0a615f4a9c810e95 *html/reportGear.html
9a1afe06b413c4400e79d647536eda58 *html/runTandem.html
912baa3efd6bd570df218f6072007c34 *parser4PGA.jar
720b2a86b21fa0eacbaf1abdbdf455ec *unitTests/test_check_parser.R
