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| get_annotation_databases | Get the different annotation databases integrated in Omnipath |
| get_complexes_databases | Get the different complexes databases integrated in Omnipath |
| get_complex_genes | Get all the molecular complexes for a given gene(s) |
| get_interaction_databases | Get the different interaction databases |
| get_intercell_categories | Get the different intercell categories described in Omnipath |
| get_intercell_classes | Get the different intercell main classes described in Omnipath |
| get_ptms_databases | Get Post-translational modification (PTMs) databases |
| get_signed_ptms | get signs for ptms interactions |
| import_AllInteractions | Imports from Omnipath webservice all the available interactions from the different datasets |
| import_intercell_network | Imports an intercellular network combining annotations and interactions |
| import_KinaseExtra_Interactions | Imports from Omnipath webservice the interactions from kinaseextra dataset |
| import_LigrecExtra_Interactions | Imports from Omnipath webservice the interactions from ligrecextra dataset |
| import_miRNAtarget_Interactions | Imports from Omnipath webservice the interactions from miRNAtarget dataset |
| import_Omnipath_annotations | Import Omnipath Annotations |
| import_Omnipath_complexes | Import Omnipath Complexes |
| import_Omnipath_Interactions | Import Omnipath interaction database |
| import_Omnipath_intercell | Import Omnipath Intercell Data |
| import_Omnipath_PTMS | Import Omnipath post-translational modifications (PTMs) |
| import_PathwayExtra_Interactions | Imports from Omnipath webservice the interactions from Pathwayextra dataset |
| import_TFregulons_Interactions | Imports from Omnipath webservice the interactions from Dorothea dataset |
| interaction_graph | Build Omnipath interaction graph |
| OmnipathR | The OmnipathR package |
| printPath_es | print network paths given by edge sequence |
| printPath_vs | print networks paths given by node sequence |
| print_interactions | print interactions |
| ptms_graph | Post-translational modifications (PTMs) graph |