| filterUORFs {ORFik} | R Documentation |
This is a strong filtering, so that even if the cds is on another transcript , the uORF is filtered out, this is because there is no way of knowing by current ribo-seq, rna-seq experiments.
filterUORFs(uorfs, cds)
uorfs |
(GRangesList), the uORFs to filter |
cds |
(GRangesList), the coding sequences (main ORFs on transcripts), to filter against. |
(GRangesList) of filtered uORFs
Other uorfs:
addCdsOnLeaderEnds(),
removeORFsWithSameStartAsCDS(),
removeORFsWithSameStopAsCDS(),
removeORFsWithStartInsideCDS(),
removeORFsWithinCDS(),
uORFSearchSpace()