Export as bed12 format

Description

bed format for multiple exons per group, as transcripts. Can be use as alternative as a sparse .gff format for ORFs. Can be direct input for ucsc browser or IGV

Usage

export.bed12(grl, file)

Arguments

Details

If grl has no names, groups will be named 1,2,3,4..

Value

NULL (File is saved as .bed)

See Also

Other utils: bedToGR(), convertToOneBasedRanges(), fimport(), findFa(), fread.bed(), optimizeReads(), readBam(), readWig()

Examples

grl <- GRangesList(GRanges("1", c(1,3,5), "+"))
# export.bed12(grl, "output/path/orfs.bed")