| occurences {MotIV} | R Documentation |
Get the number of motifs occurences and co-occurences from a rGADEM object.
occurences(gadem) cooccurences(x)
gadem |
An object of type |
x |
A contingency table. |
occurences returns the contingency table of the number of motifs per sequences.
This object can be put in cooccurences to return the number of sequences where two motifs appear together.
Eloi Mercier <emercier@chibi.ubc.ca>
data("FOXA1_rGADEM")
oc <- occurences (gadem)
coc <- cooccurences (oc)
coc