Deprecated cell/feature data accessors/mutators

Description

These functions are now all deprecated and will be removed in a future release.

Usage

cData(sc)

cData(sc) <- value

## S4 method for signature 'SingleCellAssay'
cData(sc)

## S4 replacement method for signature 'SingleCellAssay'
cData(sc) <- value

## S4 method for signature 'SingleCellAssay,SingleCellAssay'
combine(x, y, ...)

## S4 method for signature 'SingleCellAssay,ANY'
combine(x, y, ...)

Arguments

Details

cData(sc): Return the cellData data.frame.

cData(sc)<-value: Replace the cellData with value, which can be either an AnnotatedDataFrame or data.frame. The replacement is checked that it has mandatory fields defined by its class.

combine(x, y, ...): Concatenate two experiments along rows/columns

Value

DataFrame or modifies the SingleCellAssay object in place

Replacement Functions

You should transition to use the following replacements:

cData

colData

fData

mcols

exprs

assay

combine

cbind2 or rbind2

See Also

exprs

Examples

data(vbetaFA)
colData(vbetaFA)
 mcols(vbetaFA)
t(assay(vbetaFA))