3a1e0ebad5bc3e7b6b016688f655a374 *CITATION
1ec05fc73bad7f84a80195b86465e92f *DESCRIPTION
c24a0b8f1ba92b98f2cde883a19da666 *INDEX
d591327a0c782e5e99c49f34b3575c66 *INSPEcT_GUI_sample_dataset.rds
66bfb36e27a1b376026ac4fbfab29a3b *Meta/Rd.rds
f355647edb9c45e3ad1dfe9699339222 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
eabe7d373a54f1c2adf793627fe17acf *Meta/hsearch.rds
a338315097195e2678d1c28c326988b2 *Meta/links.rds
b15c5e333567f13427dde2b2819ea691 *Meta/nsInfo.rds
227abcf6d5884d0293e0fb5ade34f7a4 *Meta/package.rds
aca4675d18783870a3a9a5c36eb4bfca *Meta/vignette.rds
eee2b0a3d72ad2829fef197643c3e16c *NAMESPACE
eaeeba1671282bc58b7887d1e1dbd0da *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/INSPEcT
22ce35f01efaf0bb6b6599a872ec0212 *R/INSPEcT.rdb
fa91252ee42ad8a64b8841ebc489c0f7 *R/INSPEcT.rdx
6882bed1c98f2800612e649300241cc2 *data/allcounts.RData
d379605e795823cef756cd143d41f4af *data/datalist
125a7b58cb4c7458a6c41333128e22d3 *data/featureWidths.RData
7d0f00bd1cc91077662de158904fa16b *data/libsizes.RData
94fd669d50e50391851f74ac45c4f009 *data/matureSim2replicates.RData
dcb6d7e5beda2ed50452acf2fd546614 *data/matureSim3replicates.RData
04dbd465f5b3cda2139957bef74ce1ed *data/nascentSim2replicates.RData
f4a57d80a79abe0aad0e7d285a66ca5c *data/nascentSim3replicates.RData
5963d44be20fecc761f33e3c6319cd2f *doc/INSPEcT.R
4d685676933fc63399b15d99c7276baf *doc/INSPEcT.Rmd
bf70a1d91391bd35103cceef603ed7ee *doc/INSPEcT.html
d59fa90eeed492709020b675728a9e94 *doc/INSPEcT_GUI.R
5be52f1fab094c39464452e8f1af1c52 *doc/INSPEcT_GUI.html
0ea086537528218afbeacebe991709ec *doc/INSPEcT_GUI.rmd
6587a178c2408d111e9d912568fe6506 *doc/index.html
66ac71c995262c4386e490ed9ec34690 *extdata/bamRep1.bam
73dc8a7014a13a16520e377e718b5fbb *extdata/bamRep2.bam
29ca188315fe36e861e786a499a1b482 *extdata/bamRep3.bam
6da0037e8c472f33092d506371ef4627 *extdata/bamRep4.bam
db8d6dcc66d62ba25ffe58d1316a2657 *help/AnIndex
3f78eb8a3069eb9cc11a5c73be1f528e *help/INSPEcT.rdb
a6090c18c87b4fceb36ef5fa2edbd769 *help/INSPEcT.rdx
c39c1884c299b389303184c356b44378 *help/aliases.rds
fec155d65e76ede50e4e01ff5a738794 *help/paths.rds
15938612fc89f3903c14fca9f142bf35 *html/00Index.html
b50155e44f71d14d566acc2c44477e61 *html/AIC-INSPEcT-method.html
a13f0e8b3bf47dd64b6f847369f70b00 *html/Extract.html
dcffff74a0282d70bb27a3de82e81af0 *html/INSPEcT-class.html
b600448a9f0f8252b210fc5bfe9abb31 *html/INSPEcT-shinyApps.html
adb5a8182c65e7c14d881d0a4d633c2e *html/INSPEcT.html
5ef188675ad57f6afb2d54bbab97de47 *html/INSPEcT_diffsteady-class.html
1cbc6a5d59b99ea600bb422f8f18fdc0 *html/INSPEcT_model-class.html
1e2ebdbf66b6ba8fb40d46650981941b *html/INSPEcT_steadyNoNascent-class.html
f115d44a0ab30281512cc21c271edc7d *html/PTratio.html
f06c18cb8b4dcf7a23eff2e8a5862068 *html/PTreg.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
ad7c5a46dc4621d435e1521ff6d1e192 *html/allcounts.html
0b6fa1e5291abae81b7f7fb10f27b179 *html/calculateRatePvals.html
9a812ad70ddecf3373dfdb0502c9dc87 *html/chisqmodel.html
01792d624649e0fb3f2bb084b779c38f *html/chisqtest.html
b3a228e225cbad42d10d85f535f53831 *html/combine.html
93c684a22b10fac3ecb642be6eca8f54 *html/compareSteady.html
0c7f19c2a7cdf536de5855a57b0c36e2 *html/compareSteadyNoNascent.html
369f901760231d2fc4d0398549da31b9 *html/computeConfidenceIntervals.html
4e4fa965feb06320adfce0fc3b2681ef *html/convergence.html
9b2128d50ba6fb8faa929e37b72f98fc *html/correlationPlot.html
0e1bcccd1c3a8356f0ef0623e759bbed *html/dim-INSPEcT-method.html
c9584ca8d05a4086845f8b7cb4e74c69 *html/featureNames-INSPEcT-method.html
e05e10b8cf770eeeeb90b043651f2d26 *html/featureWidths.html
07565e9e5b6772fc5b2b883ba8e74186 *html/geneClass.html
3b1c5f8d4a4ada7a3dcbb94d0ac96dc3 *html/inHeatmap.html
873671c3a988f80e5025628537d65f50 *html/inspectFromBAM.html
c8e2cd0aa66ea608e97663672c696fa7 *html/inspectFromPCR.html
f7d12ab558aa595f070a47f09159ae90 *html/labeledSF.html
edd7e1a18cf891f66716a173f0f900c8 *html/libsizes.html
ef5d80d1e6babec60c0fe162176cf8e2 *html/logLik.html
6171bf411b2667d0f284f2aded746595 *html/makeModelRates.html
a681643987be4e6ed47a482fa98a5d2f *html/makeOscillatorySimModel.html
3c04f18d436bbdfe9db42e2de19bf699 *html/makeSimDataset.html
9b6cdaeb7043bedf31429bf0a3b11e4f *html/makeSimModel.html
0ea3b582a5b8f532a418f073b7b11e48 *html/mature.html
f7fd7a8c60fa557766ca4f702a96eaaf *html/matureVar.html
11b20649d9b2e6ede8eabef2c4dfc162 *html/modelRates.html
d3a7da6e34e0a17367f20a49b41f7b80 *html/modelRatesNF.html
946d97b9f7de28ffe08e9c74b356e750 *html/modelSelection.html
570c98418e7b50bff3c571c3b9941b0d *html/modelingParams.html
1cb7305765b1cb3268b7705fd228e70a *html/nGenes.html
355ca64650b1f87481011764ed798d22 *html/nTpts.html
6c7c2fff6db1aba9b954b7b2862fe23f *html/newINSPEcT.html
500828d3014491dfd579d4becbf61d55 *html/plotGene.html
85d203b200a1c8e78fde77fde2d930af *html/plotMA.html
8924c1fec0f317d37cd89a5c7aae3167 *html/plotPMgene.html
1f2529edf487cafab1477cce55d5e014 *html/plotPMtrend.html
62882d8d407ba33528f46df061cb5684 *html/premature.html
c9f7673f24d3102509a1f4dd6a73045e *html/prematureVar.html
b3317e1d6fbdf6e8551633d9c41a3ad3 *html/processingDelay.html
cefceb6893e43334b5d96c8a3ec0690c *html/quantifyExpressionsFromBAMs.html
886ff171adcede03b2e7c2b46dc98bd6 *html/quantifyExpressionsFromBWs.html
979ea3c5e0f588f7b4094e9514b1603e *html/quantifyExpressionsFromTrAbundance.html
f5454f0ab1de382119418979ed0b625a *html/quantifyExpressionsFromTrCounts.html
a7e69f39a7c173de5f3f46502d410aa5 *html/ratePvals.html
245ac0f0a4f1f7c0b7b98438822dcffa *html/ratesFirstGuess.html
48123ae40c111c0b341d1d33dcea1727 *html/ratesFirstGuessVar.html
69b9b1bf2173a9d3ba48c0c0b401adab *html/removeModel.html
aed4768adb87e8ccb4a2780940b05024 *html/rocCurve.html
40018319c681a7d1f1de4c89a45b64f4 *html/rocThresholds.html
61eac1b0a444f88d1040c843dc5705ab *html/setConfidenceIntervals.html
516e6187c166d22f30b7c7b87e33a09d *html/simData3rep_Nascent.html
6a71c145b06c4cbbaeaa1024e7b66943 *html/simData3rep_NoNascent.html
48af7b219cb796bceb0d542d44957cb3 *html/simData4rep_Nascent.html
0b1a7310ceeab28f6df5510508ad38e6 *html/simData4rep_NoNascent.html
319de760477cc259805e19f7ad990cd8 *html/split.html
06809d6695f518c510ce13f43d81e044 *html/tpts.html
7efa0b45ad599c1a6b386772544ce4ed *html/viewConfidenceIntervals.html
0372aac50de1266f6db8e9fa553de885 *html/viewModelRates.html
2c0b29b4800877dd914697fb7a7ed58d *nascentAnnTabPCR.csv
b5c6dc4404607f500bcfd07cfc0ed2c6 *nascentInspObj.rds
56541634c4aaa249b4950c958d0cffa4 *nascentInspObj10.rds
4d29c7b19a149fda608e89a513811729 *totalAnnTabPCR.csv
