export.my5C {HiTC} | R Documentation

## Export `HTCexp` object to my5C website format

### Description

Export `HTCexp` object to my5C website format

### Usage

    export.my5C(x, file, genome="mm9", per.chromosome=FALSE)

### Arguments

`x` | object that inherits from class `HTCexp`
`file` | character; the prefix of the output file
`genome` | The genome version. This information is only used for the 'mat' export format. See details
`per.chromosome` | logical; export each contact maps in a different file (i.e one per chromosome pair)

### Details

A tab-delimited matrix file is generated with the row and colnames defined as follow as in the my5C web tool :
REV_2|mm9|chrX:98831149-98834145

### Author(s)

N. Servant

### See Also

`exportC`

### Examples

    ## Not run:
    data(Nora_5C)

    ## Data binning
    E14.bin<-binningC(E14$chrXchrX)

    ## Export the new intervals definition
    export.my5C(E14.bin, file="E14my5C")

    ## End(Not run)

[Package HiTC version 1.31.0 Index]