a345767320ea362a3c159e425679ad5d *CITATION
09fddd768c388463098313f8e93c3983 *DESCRIPTION
04ccdbaca6b434a28847abc114122545 *INDEX
0cbd5d1695634240261f262020cbd6c3 *Meta/Rd.rds
4ffcc064e15ca5e2d23039285f72476b *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
ee587bc7b0c4e84361f9a9e71c4adf2f *Meta/hsearch.rds
c4ec662292a382189dff2c63dd278580 *Meta/links.rds
ba34b155ba74b82a22a5153b72422341 *Meta/nsInfo.rds
e86ac9f6c1f7a305f6141178cd2c06e0 *Meta/package.rds
8e3acf5ff703279cbbbac19836f371cf *Meta/vignette.rds
b603f7a9626d42caae572262a9d9824a *NAMESPACE
72ecd186ff9413b48ea2929bb815ed34 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GenomicInteractions
ebbf12cba6db16bd7c10b2455b5ccfa4 *R/GenomicInteractions.rdb
ce872e830bf6c6409ab54bfd00168d10 *R/GenomicInteractions.rdx
398558e5248b1a617c42f5fe6c1ad024 *data/hg19.refseq.transcripts.rda
d976d748baf9338534b53095b4433f0f *data/hic_example_data.rda
e738b2c892fd3a5023e8d0a9cc9dc787 *data/mm9_refseq_promoters.rda
f3be44c2045c0287f3e042d3e80a710b *data/thymus_enhancers.rda
225fe3b2ad316e214b5a54366aa18210 *doc/chiapet_vignette.R
dc5681c0ce0917e21674fe61f74bdb59 *doc/chiapet_vignette.html
d0416f72a012ca734a7171f6838caf66 *doc/chiapet_vignette.rmd
8f4576836a31714d7f8e58a3e2dd1de7 *doc/hic_vignette.R
a27415a65a53e55897ac0c2ee5ec9f52 *doc/hic_vignette.Rmd
8d486d2c749febf6374f92dbefdecc0f *doc/hic_vignette.html
9597385754aedab651758fc993b6d01e *doc/index.html
8f4732d26550d64a9dee4252097063a1 *extdata/Seitan2013_WT_100kb_interactions.txt
adc8c65e7510394df1e46053c58796db *extdata/k562.rep1.cluster.pet3+.txt
737c74fca5b7b894901f6c3695a6a680 *help/AnIndex
6f22bb2bd308525c246e0c89665b282f *help/GenomicInteractions.rdb
c14cce2a099fbfc2f6975d04d76e7f51 *help/GenomicInteractions.rdx
baa2eff72fefdc3d0b0463d904854ec2 *help/aliases.rds
6a7e2a65661fdcc0ce62fb47154d8dfa *help/paths.rds
61a1c22ace96a36f91c9bf0c5aa2e85b *html/00Index.html
773b80aaf26326feb17a5a621dbbd398 *html/GInteractions-subsetByFeatures-methods.html
06ebde899fbde9cc8120db8874d0ddf6 *html/GenomicInteractions-class.html
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bc42a397183f87c1201121de4666fcce *html/GenomicInteractions.html
7230e7f6e91669b91495ca2d19596ea8 *html/InteractionHelpers.html
b7c7c71076e944dd9550463d1fbd0d4d *html/InteractionTrack-class.html
384344d6ac59ff62192d2212a0349124 *html/InteractionTrack.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6b557d5296b528312c6d26c2a555aff6 *html/annotateInteractions.html
adce5c2ec47f0de7fc21fca4354e4156 *html/annotateRegions.html
868ced04ae7896c6988c6674ec828cbd *html/asBED-GInteractions-method.html
220ea847ca814d4bd8bf60911774f955 *html/availableDisplayPars.html
15879e5cd092a1ae4ce75ec86497469d *html/calculateDistances.html
e8ad67beb03b01f704583b9bc2537d5d *html/categoriseInteractions.html
c023b14ae83b4946567b3ee874d2a6f3 *html/countsBetweenAnchors-methods.html
e39080fc6ff952895d5e09a6d5825d3f *html/dot-importHicLib.html
84c33f5170f0230ce604647fb9cd3733 *html/dot-importHomer.html
7c48454ed59b840f2e6fb429e92b66bc *html/dot-processChiapetName.html
1f2554f7198dbe1e94bf1570df5d3807 *html/dot-readBam.html
a8e22a29c75b545bbbe4ae8842d506d8 *html/dot-readTwoBams.html
a7ff00d73aa32dffd4a59289aa18b930 *html/dot-validateInput.html
918ff49588b346560fe874b6c2022054 *html/export.bed12.html
fb36975f1636c29180c5e08fd9151b32 *html/export.bedpe.html
a62f67daa8a08e3bd9e2ff8f2d05dcb9 *html/export.chiasig.html
519d3eb22f56c43f2eb324d9b9fed740 *html/export.igraph.html
d3b95938b9eb4cc663415e3541ddb8cd *html/get_binom_ligation_threshold.html
7e9848b9f6a0de110bc6994f911d7d4b *html/get_self_ligation_threshold.html
05710c53753f1c63bb75853818f95620 *html/getters.html
4067780372884a841ebeb1bcc562193d *html/hg19.refseq.transcripts.html
1d9ab8d92faf2b3c10f9d77dc6ca606d *html/hic_example_data.html
df5a080bfaa1537c4d67dc9a85c7ee43 *html/makeGenomicInteractionsFromFile.html
41338739b31283ac11da17a87e054c51 *html/mm9_refseq_promoters.html
0a7a1746915fbdcf4fb37b7de90136ea *html/plotAvgViewpoint.html
096b91fb9a15f02b8d047d85fddd0b46 *html/plotCisTrans.html
e3b142742c4dc1d1f0d6a1902995adaa *html/plotCounts.html
51ff8a2d917b1983985edae1320bbf68 *html/plotDists.html
37081b086de51c37437be30a8d9c9c3e *html/plotInteractionAnnotations.html
afd45c0000550702b42afa5c9b9ede8c *html/plotSummaryStats.html
72a17f176b4ab87653d4685ba4218223 *html/plotViewpoint.html
5dc205abc8e00a0e413690c3770d0f41 *html/removeDups.html
aee5a53458532be3fdb70cce136fd9d5 *html/resetAnnotations.html
eba58a384eb2a3d5af8e80fa0e983ac2 *html/sameStrand.html
60de68eba10ac6d42b8be6be39706354 *html/setters.html
e664f384d38e9198044ff126d1164b5b *html/sum-GInteractions-method.html
c06615b182e5c6363ae996124797ba07 *html/summariseByFeaturePairs.html
14260b7a1235bb5678f336243047463a *html/summariseByFeatures.html
edbf47695db7b03a46a7d6be84931100 *html/thymus_enh.html
193301f502942e2d6e274a9b361aece8 *html/updateObject-GenomicInteractions-method.html
ce3b863f0a8f5b47fef574bc5e68dbcd *html/viewPoint.html
