bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
c15ded860456588124735a5d963bb5b1 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
07b08b1e6b0e77c3a545a183fc6a783e *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
615038eface420ab41a22f6a5eee2f6f *Meta/hsearch.rds
401c09ec3cc21599a2330727769c2b1a *Meta/links.rds
d76efe2907dbeba70787e2419e8fb297 *Meta/nsInfo.rds
8d72b0f9b072adf78784981b31dd1f4d *Meta/package.rds
485571a89fdf231fe5e737d7cdd52e3e *Meta/vignette.rds
588c9577cb1d44de84af8cc02c46c0e1 *NAMESPACE
71272305b5e536bffb0f66f61023aaf5 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GenomicAlignments
05945ccdde08a865b906818e1538720c *R/GenomicAlignments.rdb
59d47f0dd36b5b75aeeb9ef6281bc8da *R/GenomicAlignments.rdx
87c1aee70a53b2832ae0a7b1d1ea22d0 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
be2f78cc17048b777cb08a54bef00385 *doc/GenomicAlignmentsIntroduction.pdf
0d307bd84b97e9958f7d683066cc6792 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
2d19d41f941851b6ce52ce629e336253 *doc/OverlapEncodings.pdf
fefe6ab83378e1021ae62b51ca854ef2 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
3f8c30def85a824df443db9feab841d5 *doc/WorkingWithAlignedNucleotides.pdf
f3fa15b65377aac5ee9c663f6bd9e203 *doc/index.html
1c40ffe1d41ef7d3f3821184383ae85e *doc/summarizeOverlaps.R
5398e425480c1f764c0dce679bd32525 *doc/summarizeOverlaps.Rnw
e582984050cbbf3873a167eed1e6d853 *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
022383aae044e50a843b9d7df7caad61 *help/AnIndex
0e73f329d075d0034621deafd9d9c134 *help/GenomicAlignments.rdb
8a71c89ba5658a2cd6f43bc25ccf5aa2 *help/GenomicAlignments.rdx
c5b93e3bf481c02a29602fc01f4cfccd *help/aliases.rds
17f8da0a099b83393c803de440a2f71c *help/paths.rds
14270f40a09a570f7403036d9702a577 *html/00Index.html
c172e17163b8a3dd8b1fd4bd6ba28c86 *html/GAlignmentPairs-class.html
3f3881c19a33e09a5888bcb4994b7518 *html/GAlignments-class.html
4a521d9aadbbe1b1c5ebea94dc927aab *html/GAlignmentsList-class.html
264b4274d460b70efd00acf72fe65d1b *html/GappedReads-class.html
002747bbb8a9203af8177abda6d64b12 *html/OverlapEncodings-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4f6849487425f1f4dfb2340cc9bae248 *html/cigar-utils.html
aac6ec87ddda8504c8647c384313e8d5 *html/coordinate-mapping-methods.html
f8eb0505ac3c33e2c424a893e1f1d61e *html/coverage-methods.html
b129e2047c857fb4d34fe31be8828c92 *html/encodeOverlaps-methods.html
e9880eef336f4b6d24a819123a6bac8e *html/findCompatibleOverlaps-methods.html
ecb0ad37b9ff6e225dd21c94d0c9c90f *html/findMateAlignment.html
ecd8111828a326c66071bc240cb795a5 *html/findOverlaps-methods.html
c414df56b16672ab067fc7c8d3437a46 *html/findSpliceOverlaps-methods.html
1e9fbd5cf3fe6d06a13cc2118b84595a *html/intra-range-methods.html
8c8476cab3ba8e4b4069327c5d209761 *html/junctions-methods.html
840c69679b9808eadfe7dde455f8b8ac *html/pileLettersAt.html
e0ea0f199b990f9c392b7769d8c82a3f *html/readGAlignments.html
704e22822a2d85870611317b8fc7db47 *html/sequenceLayer.html
12fc197348e49a34a1a026309faf4cc7 *html/setops-methods.html
ac975d6382627bbca7266ab4d5ec89e3 *html/stackStringsFromGAlignments.html
3ef3fe8527ca3545466627989f656019 *html/summarizeOverlaps-methods.html
da9028c8f884d4c46066656596acdfef *libs/i386/GenomicAlignments.dll
f1d6bc4f2a97b4345b85acc531484523 *libs/x64/GenomicAlignments.dll
22193c72fc07c32f876acee489f2ce96 *unitTests/test_GAlignments-class.R
b02dc164314a2514a39276e822352122 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
1eec99e806cfe128483fd803bcfdd43f *unitTests/test_coordinate-mapping-methods.R
229bfd98328fafca3f1ad0a5e5e1d307 *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
8e3c3cb75da36b4ab3daa58c6b46bef7 *unitTests/test_readGAlignmentsList.R
3ee2246e46dee0999386dd9538c4a5cc *unitTests/test_summarizeOverlaps-methods.R
