Get annotation derived from annotation file

Description

This method allows to retrieve annotation from MgsaSets or GAFReader class object in form of list contains GO term id's as keys and Gene ID's as values

Usage

getAnnotation(object)

## S4 method for signature 'AnnotationReader'
getAnnotation(object)

## S4 method for signature 'list'
getAnnotation(object)

## S4 method for signature 'MgsaSets'
getAnnotation(object)

## S4 method for signature ''NULL''
getAnnotation(object)

Arguments

Value

list contains GO term id's as keys and Gene ID's as values

Examples

## Not run: 
gaf_path <- system.file("extdata", "gene_association.tair.lzma",
                           package = "FoldGO", mustWork = TRUE)
gaf <- GAFReader(file = gaf_path, geneid_col = 10)
getAnnotation(gaf)

## End(Not run)