R: Chromatogram indices of analyte in a run.

selectChromIndices {DIAlignR}

R Documentation

Chromatogram indices of analyte in a run.

Description

select chromatogram indices by matching analyte and runname in oswFiles.

Usage

selectChromIndices(oswFiles, runname, analyte)

Arguments

`oswFiles`	(list of data-frames) it is the output from getOswFiles function.
`runname`	(string) Must be a combination of "run" and an iteger e.g. "run2".
`analyte`	(string) analyte is as PRECURSOR.GROUP_LABEL or as PEPTIDE.MODIFIED_SEQUENCE and PRECURSOR.CHARGE from osw file.

Value

A vector of Integers

Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-13

Examples

data(oswFiles_DIAlignR, package="DIAlignR")
## Not run: 
selectChromIndices(oswFiles = oswFiles_DIAlignR, runname = "run2", analyte = "AQPPVSTEY_2")
selectChromIndices(oswFiles = oswFiles_DIAlignR, runname = "run0",
 analyte = "14299_QFNNTDIVLLEDFQK/3")

## End(Not run)

[Package DIAlignR version 0.99.12 Index]