| plotAlignedAnalytes {DIAlignR} | R Documentation |
Plot aligned XICs group for a specific peptide. AlignObjOutput is the output from getAlignObjs fucntion.
plotAlignedAnalytes(AlignObjOutput, plotType = "All", DrawAlignR = FALSE, annotatePeak = FALSE, saveFigs = FALSE)
AlignObjOutput |
(list) The list contains AlignObj, raw XICs for reference and experiment, and reference-peak label. |
plotType |
This must be one of the strings "All", "onlyUnaligned" and "onlyAligned". |
DrawAlignR |
(logical) TRUE: ggplot objects will be returned. |
annotatePeak |
(logical) TRUE: Peak boundaries and apex will be highlighted. |
saveFigs |
(logical) TRUE: Figures will be saved in AlignedAnalytes.pdf . |
A plot to the current device.
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-13
dataPath <- system.file("extdata", package = "DIAlignR")
runs <- c("hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt",
"hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt")
AlignObjOutput <- getAlignObjs(analytes = "QFNNTDIVLLEDFQK_3", runs, dataPath = dataPath)
plotAlignedAnalytes(AlignObjOutput)