| getRunNames {DIAlignR} | R Documentation |
Fetches all osw files, then, keeps only those runs which has corresponding mzML files. mzML file names must match with RUN.FILENAME columns of osw files.
getRunNames(dataPath, oswMerged = TRUE, nameCutPattern = "(.*)(/)(.*)")
dataPath |
(char) Path to mzml and osw directory. |
oswMerged |
(logical) TRUE for experiment-wide FDR and FALSE for run-specific FDR by pyprophet. |
nameCutPattern |
(string) regex expression to fetch mzML file name from RUN.FILENAME columns of osw files. |
(dataframe) it has two columns:
filename |
(string) as mentioned in RUN table of osw files. |
runs |
(string) contain respective mzML names without extension. |
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-14
dataPath <- system.file("extdata", package = "DIAlignR")
getRunNames(dataPath = dataPath)