R: Fetch the reference run-index.

getRefRun {DIAlignR}

R Documentation

Fetch the reference run-index.

Description

Provides the reference run-index based on lowest m-score.

Usage

getRefRun(oswFiles, analyte)

Arguments

`oswFiles`	(list of data-frames) it is output from getOswFiles function.
`analyte`	(string) analyte is as PRECURSOR.GROUP_LABEL or as PEPTIDE.MODIFIED_SEQUENCE and PRECURSOR.CHARGE from osw file.

Value

An integer

Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-13

Examples

data(oswFiles_DIAlignR, package="DIAlignR")
## Not run: 
getRefRun(oswFiles = oswFiles_DIAlignR, analyte = "AQPPVSTEY_2")
getRefRun(oswFiles = oswFiles_DIAlignR, analyte = "14299_QFNNTDIVLLEDFQK/3")

## End(Not run)

[Package DIAlignR version 0.99.12 Index]