| getAlignedFigs {DIAlignR} | R Documentation |
AlignObj is the output from getAlignObjs fucntion. This function prepares ggplot objects from AlignObj.
getAlignedFigs(AlignObj, XICs.ref, XICs.eXp, refPeakLabel, annotatePeak = FALSE)
AlignObj |
(S4 object) |
XICs.ref |
(list) List of extracted ion chromatograms (dataframe) from reference run. The dataframe has two columns: first column is for time and second column indicates intensity. |
XICs.eXp |
(list) List of extracted ion chromatograms (dataframe) from experiment run.The dataframe has two columns: first column is for time and second column indicates intensity. |
refPeakLabel |
(numeric vector) It contains peak apex, left width and right width. |
annotatePeak |
(logical) TRUE: Peak boundaries and apex will be highlighted. |
A plot to the current device.
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-13
dataPath <- system.file("extdata", package = "DIAlignR")
runs <- c("hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt",
"hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt")
AlignObjOutput <- getAlignObjs(analytes = "QFNNTDIVLLEDFQK_3", runs, dataPath = dataPath)
AlignObj <- AlignObjOutput[["QFNNTDIVLLEDFQK_3"]][[1]]
XICs.ref <- AlignObjOutput[["QFNNTDIVLLEDFQK_3"]][[2]]
XICs.eXp <- AlignObjOutput[["QFNNTDIVLLEDFQK_3"]][[3]]
refPeakLabel <- AlignObjOutput[["QFNNTDIVLLEDFQK_3"]][[4]]