DIAlignR-package	DIAlignR
AffineAlignObj	AffineAlignObj-class
AffineAlignObj-class	AffineAlignObj-class
AffineAlignObjLight	AffineAlignObjLight-class
AffineAlignObjLight-class	AffineAlignObjLight-class
AffineAlignObjMedium	AffineAlignObjMedium-class
AffineAlignObjMedium-class	AffineAlignObjMedium-class
alignChromatogramsCpp	alignChromatogramsCpp
AlignObj	AlignObj-class
AlignObj-class	AlignObj-class
alignTargetedRuns	alignTargetedRuns
areaIntegrator	areaIntegrator
chromatogramIdAsInteger	chromatogramIdAsInteger
constrainSimCpp	constrainSimCpp
DIAlignR	DIAlignR
doAffineAlignmentCpp	doAffineAlignmentCpp
doAlignmentCpp	doAlignmentCpp
extractXIC_group	extractXIC_group
fetchAnalytesInfo	fetchAnalytesInfo
filenamesFromMZML	filenamesFromMZML
filenamesFromOSW	filenamesFromOSW
getAlignedFigs	getAlignedFigs
getAlignObj	getAlignObj
getAlignObjs	getAlignObjs
getAnalytes	getAnalytes
getAnalytesName	getAnalytesName
getAnalytesQuery	getAnalytesQuery
getBaseGapPenaltyCpp	getBaseGapPenaltyCpp
getChromSimMatCpp	getChromSimMatCpp
getGlobalAlignMaskCpp	getGlobalAlignMaskCpp
getGlobalAlignment	getGlobalAlignment
getLinearfit	getLinearfit
getLOESSfit	getLOESSfit
getMappedRT	getMappedRT
getMZMLpointers	getMZMLpointers
getOswAnalytes	getOswAnalytes
getOswFiles	getOswFiles
getQuery	getQuery
getRefRun	getRefRun
getRunNames	getRunNames
getSeqSimMatCpp	getSeqSimMatCpp
getXICs	getXICs
getXICs4AlignObj	getXICs4AlignObj
mapIdxToTime	mapIdxToTime
mappedRTfromAlignObj	mappedRTfromAlignObj
mergeOswAnalytes_ChromHeader	mergeOswAnalytes_ChromHeader
oswFiles_DIAlignR	oswFiles_DIAlignR
pickNearestFeature	pickNearestFeature
plotAlignedAnalytes	plotAlignedAnalytes
plotAlignmentPath	plotAlignmentPath
plotAnalyteXICs	plotAnalyteXICs
plotSingleAlignedChrom	plotSingleAlignedChrom
plotXICgroup	plotXICgroup
readChromatogramHeader	readChromatogramHeader
selectChromIndices	selectChromIndices
smoothSingleXIC	smoothSingleXIC
smoothXICs	smoothXICs
XIC_QFNNTDIVLLEDFQK_3_DIAlignR	XIC_QFNNTDIVLLEDFQK_3_DIAlignR
