# Generated by roxygen2: do not edit by hand

export(alignChromatogramsCpp)
export(alignTargetedRuns)
export(areaIntegrator)
export(constrainSimCpp)
export(doAffineAlignmentCpp)
export(doAlignmentCpp)
export(getAlignObj)
export(getAlignObjs)
export(getAnalytes)
export(getBaseGapPenaltyCpp)
export(getChromSimMatCpp)
export(getGlobalAlignMaskCpp)
export(getGlobalAlignment)
export(getMZMLpointers)
export(getMappedRT)
export(getOswAnalytes)
export(getOswFiles)
export(getRunNames)
export(getSeqSimMatCpp)
export(getXICs)
export(getXICs4AlignObj)
export(mapIdxToTime)
export(plotAlignedAnalytes)
export(plotAlignmentPath)
export(plotAnalyteXICs)
export(plotXICgroup)
exportClasses(AffineAlignObj)
exportClasses(AffineAlignObjLight)
exportClasses(AffineAlignObjMedium)
exportClasses(AlignObj)
importFrom(Rcpp,sourceCpp)
importFrom(dplyr,"%>%")
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(gridExtra,grid.arrange)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(scales,scientific_format)
importFrom(stats,ksmooth)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,loess.control)
importFrom(stats,predict)
importFrom(tidyr,gather)
importFrom(zoo,na.locf)
useDynLib(DIAlignR, .registration = TRUE)
