| gatingset_to_flowjo {CytoML} | R Documentation |
It is a R wrapper for the docker app (https://hub.docker.com/r/wjiang2/gs-to-flowjo)
gatingset_to_flowjo( gs, outFile, showHidden = FALSE, docker_img = "wjiang2/gs-to-flowjo", ... )
gs |
a GatingSet object or a folder contains the GatingSet archive (generated by previous |
outFile |
the workspace file path to write |
docker_img |
the docker image that does the actual work |
... |
other arguments passed to |
nothing
## Not run:
library(flowWorkspace)
path <- system.file("extdata",package="flowWorkspaceData")
gs_path <- list.files(path, pattern = "gs_manual",full = TRUE)
gs <- load_gs(gs_path)
#output to flowJo
outFile <- tempfile(fileext = ".wsp")
gatingset_to_flowjo(gs, outFile)
#or directly use the archive as the input (to avoid the extra copying inside of the wrapper)
gatingset_to_flowjo(gs_path, outFile)
## End(Not run)