76dfc5a56d8e1427a8ad3490539366cf *DESCRIPTION
04abe9acd244279b6c0e43be816f967f *INDEX
d4ec96ad1ca0767bf93333d96a54db1b *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
d324206a33902923e176394f8e6298ce *Meta/hsearch.rds
f92229597f1969d5d99dce558cba0bc4 *Meta/links.rds
3375a4a378d83d539f659616a26213e0 *Meta/nsInfo.rds
82aecd429be4251c2edff4ca221176e3 *Meta/package.rds
e343dda661a906ded5dd831b97d68911 *Meta/vignette.rds
729c50955a736ca2094cfdcab65e564b *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CopyNumberPlots
6d5ce162eb01ae12755624e0e6c2d4a9 *R/CopyNumberPlots.rdb
36bc7d494e61c26b6cbd2c95ada9854d *R/CopyNumberPlots.rdx
a319d31378583f387ade3cacf9283e46 *doc/CopyNumberPlots.R
2ea09613c3512a9a27afcbf47cf6f8b6 *doc/CopyNumberPlots.Rmd
f8d480c50db197547e0d7c50cab74296 *doc/CopyNumberPlots.html
7a9b1e5148a20b54afee01ead91772ae *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
66c11b914cca097fab4022bc607133b5 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
ee13d90cbb5c476ef154dc5b5faaa70c *help/AnIndex
114fff63f937b1916f61cdec123cacf4 *help/CopyNumberPlots.rdb
cd9cd45d1b33ae0b6ca1f72e3f7992fa *help/CopyNumberPlots.rdx
003b8eafa51970501d5df34c1d3f194f *help/aliases.rds
ea3e36179e74d12ed6f61c6db1cce420 *help/paths.rds
8719b99612202e7bf901b5fa1ca051e5 *html/00Index.html
3bfa099cd691aba78160b4d98dd21d47 *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
752e36f5d6dea390a1013b132ad089a6 *html/UCSCStyle.html
934b7122403d0abce508a1d8f46b0fe3 *html/Ztree2Hclust.html
b8c804e5942ed0a0db1ee400cb0cf866 *html/colByCopyNumber.html
11ca8c365b719ab59398f5b463d0e129 *html/computeHclustPlotOrder.html
3da6d83ebed57755fa240fe67d5d37f7 *html/getBAFColumn.html
b0ea031fb32a43ffdef4548690eb9089 *html/getChrColumn.html
25a1471cebc76402aceb0f0f26e79632 *html/getColumn.html
af9569bfb61210371ed6b556e4d62a1a *html/getCopyNumberColors.html
2c6e3b4a18b9ad818092e0a6eb3e36ac *html/getCopyNumberColumn.html
a0eb199d640cbf375cf36181d8860ed5 *html/getEndColumn.html
fc82cd33e772ec96106d8c008be67417 *html/getIDColumn.html
f135cb56488b04dccdb62e3e05b6845b *html/getLOHColumn.html
57a9ab7e0cb32aa6db7774af80daa777 *html/getLRRColumn.html
95de71deb89f6d5da9b5de4309863635 *html/getPosColumn.html
f0ebdf8c953601b5a920177209d9c7f9 *html/getSegmentValueColumn.html
269ec7ac1ace63ee5a9f7144edf455e5 *html/getStartColumn.html
7765df072f5bcf6f34b39ddc7273ac66 *html/loadCopyNumberCalls.html
78613bbbc63d24b81c5a3fda34eda266 *html/loadCopyNumberCallsCNVkit.html
20f2ef333ae323f46ae01e0317127e3f *html/loadCopyNumberCallsCnmops.html
aec4f613bbb1f5cc124b2a6dcadff148 *html/loadCopyNumberCallsDECoN.html
323f9d895badd9a0830c4e4707b4a796 *html/loadCopyNumberCallsDNAcopy.html
211338acd5b97dec9387b64b16eab81d *html/loadCopyNumberCallsPanelcnmops.html
38022fa24f93ce46ba4627df8c12458c *html/loadCopyNumberCallsSeg.html
bde76311246f388d853b09d117ac481d *html/loadCopyNumberCallspennCNV.html
2b9058d65e71d2fd0b2ad072be7f7c1d *html/loadSNPData.html
e7b6e23592e95f07d93c3213abc48d97 *html/loadSNPDataDNAcopy.html
e280184b63bbe1519547a45a9063b2b9 *html/loadSNPDataFromVCF.html
d1312ea175edf141016cff4deec02168 *html/plotBAF.html
e11330be3e8972522b4385facfd7b267 *html/plotCopyNumberCalls.html
7507e0fe82709b0893350e01f929c418 *html/plotCopyNumberCallsAsLines.html
999b91d546f34c55a846cb4f78a756ba *html/plotCopyNumberSummary.html
55eb6d769acc5e112da3ed95a149266e *html/plotLRR.html
236d248c1c470a46c24551e738d81543 *html/plotSingleCellCopyNumberCalls.html
dda9178fe2f6e053edfba7af6fb03fb9 *html/plotSingleCellCopyNumberSummary.html
537e2ccb88131fdcb71f5c17ea61deea *html/prepareLabels.html
b92e7b547187885e587dc752d09775b5 *html/readHDF5Ztree.html
a67444279721584f87702ac05870eeb4 *html/removeNAs.html
d35c561de94d4029cccef83fd7ebb170 *html/transformChr.html
