cluster_within_group {ComplexHeatmap} | R Documentation

## Cluster within and between Groups

### Description

Cluster within and between Groups

### Usage

    cluster_within_group(mat, factor)

### Arguments

`mat` | A matrix where clustering is applied on columns.
`factor` | A categorical vector.

### Details

The clustering is firstly applied in each group, then clustering is applied to group means. The within-group dendrograms and between-group dendrogram are finally connected by `merge_dendrogram`.

In the final dendrogram, the within group dendrograms are enforced to be flat lines to emphasize that the within group dendrograms have no sense to compare to between-group dendrogram.

### Value

A `dendrogram` object. The order of columns can be retrieved by `order.dendrogram`.

### Examples

    m = matrix(rnorm(120), nc = 12)
    colnames(m) = letters[1:12]
    fa = rep(c("a", "b", "c"), times = c(2, 4, 6))
    dend = cluster_within_group(m, fa)
    grid.dendrogram(dend, test = TRUE)

[Package ComplexHeatmap version 2.3.4 Index]