test_alter_fun {ComplexHeatmap} | R Documentation

## Test alter_fun for oncoPrint()

### Description

Test alter_fun for oncoPrint()

### Usage

    test_alter_fun(fun, type, asp_ratio = 1)

### Arguments

`fun` | The `alter_fun` for `oncoPrint`. The value can be a list of functions or a single function. See https://jokergoo.github.io/ComplexHeatmap-reference/book/oncoprint.html#define-the-alter-fun
`type` | A vector of alteration types. It is only used when `fun` is a single function.
`asp_ratio` | The aspect ratio (width/height) for the small rectangles.

### Details

This function helps you to have a quick view of how the graphics for each alteration type and combinations look like.

### Examples

    alter_fun = list(
    	mut1 = function(x, y, w, h) grid.rect(x, y, w, h, gp = gpar(fill = "red", col = NA)),
    	mut2 = function(x, y, w, h) grid.rect(x, y, w, h, gp = gpar(fill = "blue", col = NA)),
    	mut3 = function(x, y, w, h) grid.rect(x, y, w, h, gp = gpar(fill = "yellow", col = NA)),
    	mut4 = function(x, y, w, h) grid.rect(x, y, w, h, gp = gpar(fill = "purple", col = NA)),
    	mut5 = function(x, y, w, h) grid.rect(x, y, w, h, gp = gpar(lwd = 2)),
    	mut6 = function(x, y, w, h) grid.points(x, y, pch = 16),
    	mut7 = function(x, y, w, h) grid.segments(x - w*0.5, y - h*0.5, x + w*0.5, y + h*0.5, gp = gpar(lwd = 2))
    )
    test_alter_fun(alter_fun)

[Package ComplexHeatmap version 2.3.4 Index]