Package: CompGO
Title: An R pipeline for .bed file annotation, comparing GO term
        enrichment between gene sets and data visualisation
Description: This package contains functions to accomplish several tasks. It is
    able to download full genome databases from UCSC, import .bed files easily,
    annotate these .bed file regions with genes (plus distance) from
    aforementioned database dumps, interface with DAVID to create functional
    annotation and gene ontology enrichment charts based on gene lists (such as
    those generated from input .bed files) and finally visualise and compare
    these enrichments using either directed acyclic graphs or scatterplots.
Version: 1.23.0
Authors@R: c(person("Sam D.", "Bassett", role = 'aut',
    email='S.Bassett@victorchang.edu.au'),
    person("Ashley J.", "Waardenberg", role=c('aut', 'cre'),
    email='A.Waardenberg@victorchang.edu.au'))
License: GPL-2
Depends: RDAVIDWebService
Imports: rtracklayer, Rgraphviz, ggplot2, GenomicFeatures,
        TxDb.Mmusculus.UCSC.mm9.knownGene, pcaMethods, reshape2,
        pathview
biocViews: GeneSetEnrichment, MultipleComparison, GO, Visualization
git_url: https://git.bioconductor.org/packages/CompGO
git_branch: master
git_last_commit: 89b2d6c
git_last_commit_date: 2019-10-29
Date/Publication: 2019-11-10
NeedsCompilation: no
Packaged: 2019-11-11 04:27:42 UTC; biocbuild
Author: Sam D. Bassett [aut],
  Ashley J. Waardenberg [aut, cre]
Maintainer: Ashley J. Waardenberg <A.Waardenberg@victorchang.edu.au>
Built: R 4.0.0; ; 2019-11-11 14:55:26 UTC; windows
