The chicagoData class.

Description

Constructor for the chicagoData class.

Usage

chicagoData(...)

Arguments

Details

While this function can be used to create a chicagoData object, most users will use the setExperiment function instead.

Value

A chicagoData object has three slots, accessed as follows:

* intData(cd) is a data.table (note: not a data.frame) that contains information about fragment pairs. * settings(cd) is a list of settings, usually set with the setExperiment() function. For more information about valid settings, please see defaultSettings. To modify the settings, use modifySettings. * params(cd) is a list of parameters. CHiCAGO estimates these automatically, as part of the pipeline.

Author(s)

Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett

See Also

setExperiment, defaultSettings

Examples

  cd <- chicagoData()