Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt

Description

Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt

Usage

data(ExonPlusUtr.human.GRCh37)

Format

GRanges with slot start holding the start position of the exon, slot end holding the end position of the exon, slot rownames holding ensembl transcript id and slot space holding the chromosome location where the gene is located. In addition, the following variables are included.

strand

1 for positive strand and -1 for negative strand

description

description of the transcript

ensembl_gene_id

gene id

utr5start

5' UTR start

utr5end

5' UTR end

utr3start

3' UTR start

utr3end

3' UTR end

Details

used in the examples Annotation data obtained by: mart = useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") ExonPlusUtr.human.GRCh37 = getAnnotation(mart=human, featureType="ExonPlusUtr")

Examples

data(ExonPlusUtr.human.GRCh37)
slotNames(ExonPlusUtr.human.GRCh37)