loci {ChIPanalyser}R Documentation

Accessor Method for the loci slot in a ChIPScore object

Description

Setter Method for the loci slot in a ChIPScore object

Usage

loci(object)

Arguments

object

object is ChIPScore object

Details

When using the processingChIP, this functions will return a name GRanges with the loci of interest. These loci will either result from user input or extracted from the ChIP profiles (see processingChIP and lociWidth). This functions enalbles you to extract those loci from the ChIPScore object.

Value

Returns the value assigned to the loci slot in a ChIPScore object.

Author(s)

Patrick C. N. Martin <p.martin@essex.ac.uk>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

Examples

# Loading data
data(ChIPanalyserData)

eveLocusChip<-processingChIP(eveLocusChip,eveLocus)
loci(eveLocusChip)
[Package ChIPanalyser version 1.9.1 Index]